[BioC] GC-RMA on m430a chips
Akil Merchant
am691886 at bcm.tmc.edu
Thu Sep 4 15:07:58 MEST 2003
I have been able to perfom gc-rma on the mu74av2 chips with v0.4 of
gc-rma.
When I tried using gc-rma on the m430a chip I got this error:
>stu.gcrma<-gcrma(stu.ab)
>Loading required package: moe430aprobe
>Loading required package: matchprobes
>background correction: gcrma
>normalization: quantiles
>PM/MM correction : pmonly
>expression values: medianpolish
>background correcting...done.
>normalizing...Error in as.vector(data) : NA/NaN/Inf in foreign
function call (arg 1)
I was able to perform regular rma on the same affy batch object
(stu.ab), so I don't think there is a problem with the ab object.
Any suggestions?
Akil
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