[BioC] gcrma bug fixed--currently available from CVS

[Zhijin Wu]

Sorry I didn't make it clear..
currently you will need to get it from the "developer page" link from
bioconductor (at the bottom of the menu, or

http://franz.stat.wisc.edu/cgi-bin/viewcvs.cgi/Rpacks/gcrma/?cvsroot=Bioconductor



On Mon, 15 Sep 2003, Zhijin Wu wrote:

> We've just updated the gcrma package. The bug due to sequence
> matching mistake has been fixed.
> Thanks to Akil Merchant and Michael McDonald who brought it to our
> attention, and thank Wolfgang for explaining the precise way of matching
> those!
> 
> Jean
> On Mon, 15 Sep 2003, Michael McDonald wrote:
> 
> > Hello,
> > Does anyone know why gcrma wouldn't work with the moe chips when it 
> > works for the mgu74av2 chipset? Any input is appreciated.  the output 
> > is:
> > WORKS!
> >  > gcrmadata<-gcrma(gcdata)
> > Loading required package: mgu74av2probe
> > Loading required package: matchprobes
> > background correction: gcrma
> > normalization: quantiles
> > PM/MM correction : pmonly
> > expression values: medianpolish
> > background correcting...done.
> > normalizing...done.
> > 12488 ids to be processed
> > .........
> > 
> > 
> > ????
> >  > gcrmadata<-gcrma(data)
> > Loading required package: moe430bprobe
> > Loading required package: matchprobes
> > background correction: gcrma
> > normalization: quantiles
> > PM/MM correction : pmonly
> > expression values: medianpolish
> > background correcting...done.
> > normalizing...Error in as.vector(data) : NA/NaN/Inf in foreign function 
> > call (arg 1)
> > 
> > best,
> > michael
> > 
> > Michael J. McDonald Ph.D.
> > Universite de Geneve c/o Duboule Lab
> > Department of Zoologie and Biologie Animale
> > Quai Ernest-Ansermet 30
> > CH-1211 Geneve 4
> > phone 41.22.379.67.94
> > fax	   41.22.379.67.95
> > 
> > _______________________________________________
> > Bioconductor mailing list
> > Bioconductor at stat.math.ethz.ch
> > https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor
> > 
> 
>