[BioC] Fwd: [base] LCB R-Plugins v 0.92

[Lao Saal]

I thought this might be of interest.  Here's a forwarded message and 
attachment from Ola Spjuth allowing LIMMA and SMA to work as a BASE 
(http://base.thep.lu.se) plug-in.

Please direct questions to Ola or the BASE mailing list.

Lao

Lao H. Saal
Institute for Cancer Genetics / Herbert Irving Cancer Center
College of Physicians & Surgeons, Columbia University
1150 St. Nicholas Ave, Room 302  New York, New York  10032
email: lhs74 at columbia.edu   tel: +1-212-851-5263

>From: "Ola Spjuth" <ola.spjuth at lcb.uu.se>
>To: <basedb-users at lists.sourceforge.net>
>Subject: [base] LCB R-Plugins v 0.92
>Organization: Linnaeus Centre for Bioinformatics
>X-Mailer: Microsoft Outlook, Build 10.0.2627
>Date: Mon, 29 Sep 2003 17:43:42 +0200
>
>I have attached the R: Bioconductor (LIMMA) and SMA plugins v 0.92 created 
>for the Linnaeus Centre for Bioinformatics including:
>
>
>
>base_R.pl                      Perl-script for executing R-scripts from BASE
>
>parse.basefile.R             Functions for reading/writing BASEfiles within R
>
>arrayplots.R                   R-script for constructing various Array plots
>
>rnorm.R                         R-script using Bioconductor(LIMMA) 
>functions to normalize 2ch arrays
>
>rnorm.betw.arr.R            R-script using Bioconductor(LIMMA) functions 
>to normalize between arrays
>
>bstat.R                          R-script using Bioconductor(LIMMA) 
>functions to rank genes by B-statistics
>
>bstat.dupcor.R               R-script using Bioconductor(LIMMA) functions 
>to rank genes by B-statistics with duplicate correction (dupcor)
>
>
>
>All plugins output HTML-files with plots. Many updates and bug fixes since 
>last version. Design matrices are imputed as text in plugin.
>
>See included README.txt for more information and installation 
>instructions. Still manual installation, I have not investigated the new 
>plugin devkit.
>
>
>
>Use it if you like, send me bug-reports if you like, and please write your 
>own R-scripts and share with everyone.
>
>
>
>Regards,
>
>
>
>- - - - - - - - - - - - - - - - - -  -
>
>Ola Spjuth
>
>ola at crossoverbio.com
>
><http://www.crossoverbio.com/>www.crossoverbio.com
>
>www.lcb.uu.se
>
>
>
>
>
>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: R-plugins_lcb_v092.tar.gz
Type: application/octet-stream
Size: 10285 bytes
Desc: not available
Url : https://www.stat.math.ethz.ch/pipermail/bioconductor/attachments/20030929/56c28727/R-plugins_lcb_v092.tar.obj