[BioC] Affymetrix errormodel?

[Rafael A. Irizarry]

more details about RMAs error model and fitting procedures are here:

http://128.32.135.2/users/bolstad/ComputeRMAFAQ/ComputeRMAFAQ.html

On Tue, 2 Sep 2003 w.huber at dkfz-heidelberg.de wrote:

> Hi,
> 
> An incomplete selection is here:
> 
> Irizarry RA, Hobbs B, Collin F, Beazer-Barclay YD, Antonellis KJ, Scherf
> U, Speed TP. Exploration, normalization, and summaries of high density
> oligonucleotide array probe level data. Biostatistics. 2003
> Apr;4(2):249-64.
> and a number of other papers by the same first author.
> 
> David Rocke and Blythe Durbin have a number of papers, as far as I
> know they, as well as Trey Ideker were the first to use a two-component
> (constant + proportional) error model, see e.g. J Comp. Biol. 8 page 557.
> http://www.cipic.ucdavis.edu/~dmrocke/preprints.html
> 
> The first three links in the "publications" section of my webpage (see
> http address below) may also be useful, as well as bioconductor's "vsn"
> package and its vignette.
> 
> And recently there was a workshop
> http://www.affymetrix.com/corporate/events/seminar/microarray_workshop.affx
> with some relevant talks, esp. on approaches to the
> incorporation of biochemical probe properties into the modeling.
> 
> Best regards
>   Wolfgang
> 
> -------------------------------------
> Wolfgang Huber
> Division of Molecular Genome Analysis
> German Cancer Research Center
> Heidelberg, Germany
> Phone: +49 6221 424709
> Fax:   +49 6221 42524709
> Http:  www.dkfz.de/mga/whuber
> -------------------------------------
> 
> On Sat, 30 Aug 2003, Djork Clevert wrote:
> 
> > Hello,
> >
> > is there anyone who can recommend me some good articles dealing with
> > error models for expression array normalization?
> >
> >
> > Thanks,
> >
> > Djork
> >
> > |-|-|
> >
> > + djork clevert | kolberger str. 12-13 | d-13357 berlin
> >
> 
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