[BioC] Diagnostic plots error
michael watson (IAH-C)
michael.watson at bbsrc.ac.uk
Mon Sep 1 12:12:29 MEST 2003
Possibly not that much help, but I have encountered the "Figure margins too large" problem before, and it is what it says it is - basically something is trying to fit a graph or figure into an image (postscript in your case) that isn't big enough. Somewhere, the code is setting the size of the postscript image output to be a certain size and your graph is bigger.
I don't know maNormPlots() very well, but check the documentation to see if somehow you can play about with the image output size
From: Mike Schaffer [mailto:mschaff at bu.edu]
Sent: 01 September 2003 07:16
To: bioconductor at stat.math.ethz.ch
Subject: [BioC] Diagnostic plots error
Took a few days, but I'm up to speed with R and Bioconductor.
I have the individual plots working via X11, but the diagnostic plots
are causing me trouble. I'm having a problem that I saw (in the
mailing list archives) was related to the layout subroutine.
When I run the diagnostic plots, I get the following errors:
Error in plot.new() : Figure margins too large
Error in factor(z, levels = 1:nlevels(x), labels = levels(x), ordered =
invalid labels; length 0 should be 1 or 2
Has this bug been investigated or is there a workaround? Can anyone
offer help? Thanks.
(Mac OS X 10.2.6, BioC 1.2, R 1.7.1, iBook 600mHz, 640MB RAM)
system powerpc, darwin6.6
Bioconductor mailing list
Bioconductor at stat.math.ethz.ch
More information about the Bioconductor