[BioC] Error with getBioC() under Mac OS 10.2.6
John Maindonald
john.maindonald at anu.edu.au
Tue Sep 23 13:48:30 MEST 2003
I am running Jan de Leeuw's compilation of R, thus:
R : Copyright 2003, The R Development Core Team
Version 1.7.1 Patched (2003-06-21)
I copied the Bioconductor install script from the Bioconductor
web site (http://www.bioconductor.org/reposToolsDesc.html)
a few moments ago.
I ran R from root and sourced the install script.
Installation of repostools seems to go alright. But then I get an
error:
------------------------------------------------------------------------
---------------------------
> getBioC()
Running getBioC version 1.2.41....
If you encounter problems, first make sure that
you are running the latest version of getBioC()
which can be found at: www.bioconductor.org/getBioC.R
Please direct any concerns or questions to
bioconductor at stat.math.ethz.ch.
[1] "Installing reposTools ..."
* Installing *source* package 'reposTools' ...
** R
** data
** inst
** help
>>> Building/Updating help pages for package 'reposTools'
Formats: text html latex example
ReposEntry-class text html latex example
. . .
userQuery text html latex example
winConvertSourceRepos text html latex example
* DONE (reposTools)
* DONE (INSTALL)
Creating a new generic function for "summary" in package
reposTools
Synching your local package management information ...
Converting /usr/local/lib/R/library to new local library data format.
Error in if (e1[i] != e2[i]) return(TRUE) :
missing value where TRUE/FALSE needed
Error in library(reposTools) : .First.lib failed
>
------------------------------------------------------------------------
---------------------------
Is there something obvious that I am doing incorrectly?
Thanks.
John Maindonald email: john.maindonald at anu.edu.au
phone : +61 2 (6125)3473 fax : +61 2(6125)5549
Centre for Bioinformation Science, Room 1194,
John Dedman Mathematical Sciences Building (Building 27)
Australian National University, Canberra ACT 0200.
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