November 2003 Archives by subject
Starting: Sat Nov 1 00:36:27 MEST 2003
Ending: Sun Nov 30 22:17:09 MEST 2003
Messages: 256
- [BioC] (no subject)
Subramanian Karthikeyan
- [BioC] (no subject)
Duhaime Johanne
- [BioC] (no subject)
zhao luo
- [BioC] (no subject)
christian.riedel at biologie.uni-ulm.de
- [BioC] (no subject)
singaram muthu
- [BioC] (no subject)
Jeff Gentry
- [BioC] (no subject)
Vincent Carey 525-2265
- [BioC] [limma] Design and contrast matrices question
Sean Davis
- [BioC] [limma] Design and contrast matrices question
Gordon Smyth
- [BioC] [limma] How do I set "spacing" in lmFit ???
Marcelo Luiz de Laia
- [BioC] [limma] How do I set 'spacing' in lmFit ???
Gordon K Smyth
- [BioC] [limma] How do I set 'spacing' in lmFit ???
Marcelo Luiz de Laia
- [BioC] [limma] How do I set 'spacing' in lmFit ???
Gordon Smyth
- [BioC] [marrayNorm] Is it possible to obtain normalized
intensityvalues ?
Rob Tempelman
- [BioC] [marrayNorm] Is it possible to obtain normalized intensity
values ?
Marcelo Luiz de Laia
- [BioC] [marrayNorm] Is it possible to obtain normalized intensity
values ?
Jean Yee Hwa Yang
- [BioC] A question about multiple analysis
Marcelo Luiz de Laia
- [BioC] A question about multiple analysis
Gordon Smyth
- [BioC] add gcrma to bgcorrect methods in rma
Anthony Bosco
- [BioC] add gcrma to bgcorrect methods in rma
Ken Simpson
- [BioC] Affy analysis
Yuk Fai Leung
- [BioC] affy packages on Linux doesn't get installed
juliab at stat.berkeley.edu
- [BioC] affy troubles
peter robinson
- [BioC] affy troubles
peter robinson
- [BioC] Affymetrix Postdoctoral Opportunity
VanLieu, Connie
- [BioC] Annotating yeast ORFs with GO and KEGG
Shih-Te Yang
- [BioC] Annotating yeast ORFs with GO and KEGG
Ken Simpson
- [BioC] BioC release 1.3
Josephine.Liang at uchsc.edu
- [BioC] BioC release 1.3
Josephine.Liang at uchsc.edu
- [BioC] Bioconductor
James MacDonald
- [BioC] bioconductor
Roger Vallejo
- [BioC] bioconductor
A.J. Rossini
- [BioC] bioconductor
Warnes, Gregory R
- [BioC] bioconductor
A.J. Rossini
- [BioC] bioconductor
w.huber at dkfz-heidelberg.de
- [BioC] bioconductor
Gordon Smyth
- [BioC] bioconductor
Warnes, Gregory R
- [BioC] bioconductor
Yuk Fai Leung
- [BioC] Bioconductor
Robert Cribbie
- [BioC] bioconductor
Paul Grosu
- [BioC] BioConductor beginner needing to annotate clones
Law, Annie
- [BioC] Bioconductor Programmer's Reference
Jeff Gentry
- [BioC] Cannot open compressed file
Simon, Richard (NIH/NCI)
- [BioC] Cannot open compressed file
Robert Gentleman
- [BioC] Cannot open compressed file
Jeff Gentry
- [BioC] cdf files
James MacDonald
- [BioC] cdf files
Laurent Gautier
- [BioC] cdf files
jamie zhou
- [BioC] CDF package needed for Barley chip
U. Baumann
- [BioC] CDF package needed for Barley chip
James MacDonald
- [BioC] CDF package needed for Barley chip
w.huber at dkfz-heidelberg.de
- [BioC] CDF package needed for Barley chip
lshen
- [BioC] CHRLOC data
Robert Gentleman
- [BioC] Clustering in R....
Marcus
- [BioC] Clustering in R....
Sean Davis
- [BioC] combine two objects & adding/deleting arrays in an obj ect
Yuk Fai Leung
- [BioC] combine two objects & adding/deleting arrays in an obj ect
Jean Yee Hwa Yang
- [BioC] combine two objects & adding/deleting arrays in an object
Yuk Fai Leung
- [BioC] combine two objects & adding/deleting arrays in an object
Jean Yee Hwa Yang
- [bioC] complete analysis > session from start to finish
Paul Grosu
- [bioC] complete analysis > session from start to finish
John Zhang
- [bioC] complete analysis > session from start to finish
Robert Gentleman
- [bioC] complete analysis > session from start to finish
peter robinson
- [BioC] Debian packages for BioConductor
A.J. Rossini
- [BioC] diff (Beginner's question)
Adaikalavan RAMASAMY
- [BioC] diff (Beginner's question)
peter robinson
- [BioC] Difference between the analysis of cDNA,
spotted oligo arrays and comparative genomics hybridization?
Yuk Fai Leung
- [BioC] Difference between the analysis of cDNA, spotted
oligo arrays and comparative genomics hybridization?
Gordon Smyth
- [BioC] Difference between the analysis of cDNA, spotted oligo
arrays and comparative genomics hybridization?
Jean Yee Hwa Yang
- [BioC] Difference value from MAS from affy in R vs. MAS 5.0
Microarray suite
Luo, Wen
- [BioC] Difference value from MAS from affy in R vs. MAS 5.0
Microarray suite
Rafael A. Irizarry
- [BioC] Differences between spikein chips and rgu34a?
Andrew Harrison
- [BioC] directed graph with Rgraphviz
Laurent Gautier
- [BioC] display spots of multiple control status (maControls)
Foata,Francis,LAUSANNE,NRC/N&H
- [BioC] Doubt and Problem(?) with analysis with marray tools
Marcelo Luiz de Laia
- [BioC] Doubt and Problem(?) with analysis with marray tools
Gordon Smyth
- [BioC] download page for all packages?
Cooper Bethea
- [BioC] download page for all packages?
Robert Gentleman
- [BioC] download page for all packages?
Cooper Bethea
- [BioC] error from library(affy)
Yasushi Okubo
- [BioC] Error message in MDiagnPlots1
Richard Friedman
- [BioC] Error message in MDiagnPlots1
Jean Yee Hwa Yang
- [BioC] Estrogen Data
Bernd Holleczek
- [BioC] Estrogen Data
Laurent Gautier
- [BioC] Flags in marrayRaw
michael watson (IAH-C)
- [BioC] Flags in marrayRaw
Jean Yee Hwa Yang
- [BioC] From Unigene IDs to PubMed abstracts
Lawrence-Paul Petalidis
- [BioC] From Unigene IDs to PubMed abstracts
John Zhang
- [BioC] From Unigene IDs to PubMed abstracts
John Zhang
- [BioC] From Unigene IDs to PubMed abstracts
Robert Gentleman
- [BioC] gcrma
Christian.Stratowa at vie.boehringer-ingelheim.com
- [BioC] gcrma commands in expresso function
Anthony Bosco
- [BioC] GCRMA error
Stuart M. Chambers
- [BioC] GCRMA error
Zhijin Wu
- [BioC] GCRMA error
w.huber at dkfz-heidelberg.de
- [BioC] genefilter
aedin culhane
- [BioC] handling scanalyze output format
Vincent Carey 525-2265
- [BioC] Heatmap function
Mark Reimers
- [BioC] Heatmap function
Liaw, Andy
- [BioC] heatmap() column ordering
Dave Waddell
- [BioC] heatmap() column ordering
Vincent Carey 525-2265
- [BioC] heatmap() column ordering
Johannes Hüsing
- [BioC] heatmap() column ordering
Steffen Moeller
- [BioC] Help for make a dendrogram (philogenetic tree)
Marcelo Luiz de Laia
- [BioC] help w/ bg.correct.gcrma
James MacDonald
- [BioC] help w/ bg.correct.gcrma
Zhijin Wu
- [BioC] How package I use for verify differentialy expressed
genes after Normalization with marrayNorm?
Jean Yee Hwa Yang
- [BioC] How package I use for verify differentialy expressed genes
after Normalization with marrayNorm?
Marcelo Luiz de Laia
- [BioC] How package I use for verify differentialy expressed genes
after Normalization with marrayNorm?
Marcelo Luiz de Laia
- [BioC] how to display graphics on the web?
LIANHE SHAO
- [BioC] how to display graphics on the web?
Warnes, Gregory R
- [BioC] how to display graphics on the web?
Ramon Diaz-Uriarte
- [BioC] how to display graphics on the web?
michael watson (IAH-C)
- [BioC] how to flag bad spots
zhao luo
- [BioC] how to flag bad spots
Paul Grosu
- [BioC] inconsistent annotation between "getGO()" and "getGO()"
Shih-Te Yang
- [BioC] inconsistent annotation between "getGO()" and "getGO()"
John Zhang
- [BioC] incorrect gene symbols in annotate
Anthony Bosco
- [BioC] incorrect gene symbols in annotate
John Zhang
- [BioC] incorrect gene symbols in annotate
Robert Gentleman
- [BioC] index between genes and pathways
Shih-Te Yang
- [BioC] index between genes and pathways
John Zhang
- [BioC] index between genes and pathways
Robert Gentleman
- [BioC] Label genes on MvA plot
Anthony Bosco
- [BioC] Label genes on MvA plot
James MacDonald
- [BioC] Limma
Kim Kulltima
- [BioC] Limma
Gordon Smyth
- [BioC] Limma coerce error
utepandragon at tiscali.it
- [BioC] limma design matrix question
Marcelo Luiz de Laia
- [BioC] limma design matrix question
Gordon Smyth
- [BioC] Limma error
Amin Momin
- [BioC] Limma error
James MacDonald
- [BioC] Limma issues.
Marcus
- [BioC] Limma issues.
Gordon Smyth
- [BioC] limma toptable output
Dick Beyer
- [BioC] limma toptable output
James Wettenhall
- [BioC] Locate genes on M v A plot
Anthony Bosco
- [BioC] mageml
Cary Miller
- [BioC] mageml
Vincent Carey 525-2265
- [BioC] mageml
Cary Miller
- [BioC] mageml
Vincent Carey 525-2265
- [BioC] Manova nuances
Michael Benjamin
- [BioC] More than one weight with marrayRaw class
Mike Schaffer
- [BioC] More than one weight with marrayRaw class
Jean Yee Hwa Yang
- [BioC] More than one weight with marrayRaw class
Gordon Smyth
- [BioC] multtest problem
Josephine.Liang at uchsc.edu
- [BioC] normalizing 133 a and b
Rob Dunne
- [BioC] normalizing 133 a and b
Mark Reimers
- [BioC] OpenPBS
Fujito Atsuya
- [BioC] option rm.mask=TRUE in ReadAffy
t-kawai at hhc.eisai.co.jp
- [BioC] pca analysis/plotting in 3D
Anthony Bosco
- [BioC] pca analysis/plotting in 3D
Natalie Thorne
- [BioC] pca analysis/plotting in 3D
aedin culhane
- [BioC] Probe Cell
s0uchi02
- [BioC] Probe Cell
James MacDonald
- [BioC] Probe Cell
Park, Richard
- [BioC] problem loading ontoTools
Nicholas Lewin-Koh
- [BioC] Problem outputting normalized file
Richard Friedman
- [BioC] Problem outputting normalized file
Jean Yee Hwa Yang
- [BioC] Problem outputting normalized file
Richard Friedman
- [BioC] Problem outputting normalized file
Jenny Drnevich
- [BioC] Problem outputting normalized file
Jenny Drnevich
- [BioC] Problem reading in files with marrayInput
Richard Friedman
- [BioC] Problem reading in files with marrayInput
Jean Yee Hwa Yang
- [BioC] Problem reading in files with marrayInput
James MacDonald
- [BioC] Problem reading in files with marrayInput
Richard Friedman
- [BioC] Problem reading in files with marrayInput Ignore previous
response
Richard Friedman
- [BioC] Problem reading in files with marrayInput Ignore previous
response
Jean Yee Hwa Yang
- [BioC] Problems about Heatmap
Shih-Te Yang
- [BioC] Problems highlight control spots in MA plots
christian.riedel at biologie.uni-ulm.de
- [BioC] Problems highlight control spots in MA plots
Jean Yee Hwa Yang
- [BioC] Problems reading in Imagene files
Edo Plantinga
- [BioC] Problems reading in Imagene files
James MacDonald
- [BioC] Problems reading in Imagene files
Gordon Smyth
- [BioC] PSB Extended WorkShop on Alternative Splicing
Wang, Hui
- [BioC] question in read.exprSet and read.phenoData
Marcelo Luiz de Laia
- [BioC] question in read.exprSet and read.phenoData
Marcelo Luiz de Laia
- [BioC] Rdbi/RdbiPgSQL fixes
Markus Neteler
- [BioC] Rdbi/RdbiPgSQL fixes
John Zhang
- [BioC] Rdbi/RdbiPgSQL fixes
John Zhang
- [BioC] re-built a GO package by using function "GOPkgBuilder"?
Shih-Te Yang
- [BioC] re-built a GO package by using function "GOPkgBuilder"?
John Zhang
- [BioC] Re: [R] A co-occurrence matrix
Sean Davis
- [BioC] RE: Bioconductor Digest, Vol 9, Issue 28
Yuk Fai Leung
- [BioC] Re: gcrma
Rafael A. Irizarry
- [BioC] RE: gcrma
Christian.Stratowa at vie.boehringer-ingelheim.com
- [BioC] RE: heatmap() column ordering
Dave Waddell
- [BioC] Re: how to display graphics on the web?
Colin Smith
- [BioC] Re: Manova nuances
Stephen P. Baker
- [BioC] Re: Manova nuances
Liaw, Andy
- [BioC] Re: Manova nuances
Michael Benjamin
- [BioC] Re: Manova nuances
Baker, Stephen
- [BioC] Re: Manova nuances
Michael Benjamin
- [BioC] Re: Manova nuances
Stephen P. Baker
- [BioC] Re: Manova nuances
Michael Benjamin
- [BioC] Re: Manova nuances
Stephen P. Baker
- [BioC] Re: Manova nuances
Liaw, Andy
- [BioC] Re: Manova nuances
Baker, Stephen
- [BioC] Re: maPlot and defining controls
Chris Bye
- [BioC] Re: OpenPBS
Colin Smith
- [BioC] Re: read.GenePix() function
Hua Weng
- [BioC] Re: read.GenePix() function
Jean Yee Hwa Yang
- [BioC] Re: read.GenePix() function
Gordon Smyth
- [BioC] Re: webbioc configuration
Colin Smith
- [BioC] Re:MAGEML
sdurinck
- [BioC] Re; MAGEML
Steffen Durinck
- [BioC] Recent changes to Bioconductor packages
madman at jimmy.harvard.edu
- [BioC] Recent changes to Bioconductor packages
madman at jimmy.harvard.edu
- [BioC] Recent changes to Bioconductor packages
madman at jimmy.harvard.edu
- [BioC] Recent changes to Bioconductor packages
madman at jimmy.harvard.edu
- [BioC] Recent changes to Bioconductor packages
madman at jimmy.harvard.edu
- [BioC] Rgraphviz build problems
Sean Davis
- [BioC] Rgraphviz build problems
Kasper Daniel Hansen
- [BioC] Rgraphviz build problems
Sean Davis
- [BioC] Rgraphviz build problems
A.J. Rossini
- [BioC] RMA on affy package
Yang Tang
- [BioC] RMA on affy package
Rafael A. Irizarry
- [BioC] RNA digestion plots
Kevin Dawson
- [BioC] RNA digestion plots
William Kenworthy
- [BioC] RNA digestion plots
Lawrence Paul Petalidis
- [BioC] RNA digestion plots
James MacDonald
- [BioC] RNA digestion plots
Tan, MinHan
- [BioC] RNA digestion plots
Francois Collin
- [BioC] RNA digestion plots
peter robinson
- [BioC] Scanarray format problem
Mathieu Drapeau
- [BioC] Scanarray format problem
Jean Yee Hwa Yang
- [BioC] scatter plot
Liping Cheng
- [BioC] scatter plot
Marcelo Luiz de Laia
- [BioC] segmentation fault with using normalize.quantiles(),
affy library
Siew Leng TENG
- [BioC] simple ANOVA
Roger Vallejo
- [BioC] simple ANOVA
James MacDonald
- [BioC] singlearrayerrormodel
kim750 at ggbio.com
- [BioC] singlearrayerrormodel
w.huber at dkfz-heidelberg.de
- [BioC] Software for clest?
Peter Baker (CMIS, St Lucia)
- [BioC] Software for clest?
Sandrine Dudoit
- [BioC] Stange tailing in a Volcano-plot
Valtteri Wirta
- [BioC] Stange tailing in a Volcano-plot
Gordon Smyth
- [BioC] Status of binary CEL file support
Ben Bolstad
- [BioC] Status of binary CEL file support
William Kenworthy
- [BioC] Status of binary CEL file support
Tan, MinHan
- [BioC] Status of binary CEL file support
James MacDonald
- [BioC] Support for binary cel files
Ben Bolstad
- [BioC] Unknown cdf error while processing affy files
Tapan Mehta
- [BioC] Unknown cdf error while processing affy files
James MacDonald
- [BioC] Unknown cdf error while processing affy files
Stephen Henderson
- [BioC] unusual ratio
Anthony Bosco
- [BioC] using marrayInput package with GenePix .gpr file -
read.GenePix()
Lin, Michael W.
- [BioC] using marrayInput package with GenePix .gpr file -
read.GenePix()
Jean Yee Hwa Yang
- [BioC] very small fold change from RMA data
Qiang Li
- [BioC] webbioc configuration
Ron Ophir
- [BioC] Which platform is better?Windows or Linux?
marchiem at libero.it
- [BioC] Which platform is better?Windows or Linux?
Jeff Gentry
- [BioC] Workshop on Statistics in Functional Genomics 2004
Christina Kuenzli
- [BioC] Workshop on Statistics in Functional Genomics 2004
Martin Maechler
- FW: [BioC] bioconductor
Warnes, Gregory R
- Fwd: Re: Fwd: Re: [BioC] Clustering in R....
Marcus
Last message date:
Sun Nov 30 22:17:09 MEST 2003
Archived on: Mon Dec 1 15:44:53 MEST 2003
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