[BioC] More than one weight with marrayRaw class
Jean Yee Hwa Yang
jean at biostat.ucsf.edu
Tue Nov 11 16:56:20 MET 2003
Hi Mike,
The current solution would be to modify read.marrayRaw and read in the two
columns you are interested in. Construct a filter functions and store the
results in the slot "maW".
Alternately, you can store any statistics in the class "marrayTwo". See
help(marrayTwo) and then construct a filter functions and store the
results back in maW(marrayRaw).
Hope this helps.
Cheers
Jean
On Tue, 11 Nov 2003, Mike Schaffer wrote:
> Using marrayRaw, Is there a way to combine two columns of data from a
> GenePix file into the Weight for a spot?
>
> For instance I would like to read in the "Flag" and "F Pixels" columns
> from the GenePix file to filter out all flagged spots and spots below a
> threshold size. It doesn't appear this is possible without modifying
> the marray classes.
>
> Thanks.
>
> --
> Mike
>
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