[BioC] mageml

[Vincent Carey 525-2265]

> Hi all,
>   I am attempting to use public MAGEML data without success.  My current
> datasets are E-CAGE-{2,3,4} from ArrayExpress.  According to the tutorial
> a MAGEML file requires packages
> BioAssayData
> BioAssay
> BioMaterial
> BioSequence
> ArrayDesign
> DesignElement

please say more about what "without success" means.  what
are the specific error messages you are obtaining?

>
> I suppose this is the problem because inspection of package content shows
> this:
> > magePackageDetector(ecage3)
>
>  File  aVIB-Col_vs_aUNIL-Col.xml  contains the following packages:
>
>          BioMaterial_package
>          BioAssay_package
>          QuantitationType_package
>          BioAssayData_package
>
> There is only 1 xml file included with the data.  How can I get the
> correct packages?   Any help will be appreciated.  Thanks
>   --cam
>
> --
> //=\ Cary Miller                                    //=\
> \=// Center for Computational Pharmacology          \=//
> //=\ University of Colorado Health Sciences Center  //=\
> \=// http://compbio.uchsc.edu/Hunter_lab/Miller     \=//
> //=\ (303) 315-1584                                 //=\
>
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