[BioC] limma toptable output
Dick Beyer
dbeyer at u.washington.edu
Fri Nov 7 02:40:27 MET 2003
In the limma manual, 27 October 2003, near the bottom of page 3, the output from the command
topTable(fit, n=30, adjust="fdr")
shows a column "A".
Block Row Column ID Name M A t P.Value B
3721 8 2 1 control BMP2 -2.21 12.1 -21.1 0.000357 7.96
1609 4 2 1 control BMP2 -2.30 13.1 -20.3 0.000357 7.78
However, the help for toptable specifies "A" as an input parameter.
How did the "A" column appear in the output when it was not specified as an input argument?
Thanks much,
Dick
*******************************************************************************
Richard P. Beyer, Ph.D. University of Washington
Tel.:(206) 616 7378 Env. & Occ. Health Sci. , Box 354695
Fax: (206) 685 4696 4225 Roosevelt Way NE, # 100
Seattle, WA 98105-6099
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