[BioC] incorrect gene symbols in annotate

Anthony Bosco anthonyb at ichr.uwa.edu.au
Fri Nov 21 11:07:14 MET 2003


Hi.

I have come accross some errors when linking  probe IDs with  gene symbols.

In most cases the probe ID retrieves the corredct gene symbol, 
however the following probe IDs should correspond to CD4 antigen, CD4 
anitigen, and FCGR3A respectively.

genes<-c("203547_at","216424_at","204006_s_at")
symbol<-multiget(genes,env=hgu133aSYMBOL)

symbol
$"203547_at"
[1] "C3F"

$"216424_at"
[1] NA

$"204006_s_at"
[1] "FCGR3B"



Regards


Anthony



R session codes


library(biobase)
library(annotate)
library(hgu133a)

genes<-c("203547_at","216424_at","204006_s_at")
symbol<-multiget(genes,env=hgu133aSYMBOL)
-- 
______________________________________________

Anthony Bosco - Cell Biology Research Assistant

Institute for Child Health Research
(Company Limited by Guarantee ACN 009 278 755)
Subiaco, Western Australia, 6008

Ph 61 8 9489  , Fax 61 8 9489 7700
email anthonyb at ichr.uwa.edu.au
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