October 2008 Archives by thread
Starting: Wed Oct 1 00:36:35 CEST 2008
Ending: Fri Oct 31 23:38:12 CET 2008
Messages: 498
- [BioC] problem installing affycoretools in R in linux environment
Robert Gentleman
- [BioC] Experimental Design Question(s)
Nathan.Watson-Haigh at csiro.au
- [BioC] gene count in a GO term
Shi, Tao
- [BioC] Need help using read.table to read in non-standard data
m_kempenaar at planet.nl
- [BioC] problem installing affycoretools in R in linux environment
James W. MacDonald
- [BioC] Francis, des reductions jusqu a 80 pourcent sur tous vos achats
Claire d'iGraal
- [BioC] gene count in a GO term
Shi, Tao
- [BioC] TopGO - GenTable parameters
balag Ganesan
- [BioC] questions about altcdfenv
Hui-Yi Chu
- [BioC] GenomeGraphs labelling
Amanda Miotto
- [BioC] How to look at the output of the Poisson data model
Milena Gongora
- [BioC] Bug in getOntoly-function (package annotate)?
Jukka Hiissa
- [BioC] How are GO2PROBE built
Oura Tomonori
- [BioC] Changing fontsize in Rgraphviz
michael watson (IAH-C)
- [BioC] How to categorize genes to different functional groups based on their GO id.
ziping zhang
- [BioC] CEL files of ALL data set
Joern Toedling
- [BioC] Problem with analysis of paired data using Illumina arrays and the Lumi and limma packages
Groeneweg M (PATH)
- [BioC] Overlay Density Plot for FlowSet
Aric Gregson
- [BioC] Accession ID to Chromosome Name and Start-End
Gundala Viswanath
- [BioC] cannot install rsbml
Richard Birnie
- [BioC] asking with problems with affymetrix data
manzofabio at libero.it
- [BioC] asking with problems with affymetrix data
Sean Davis
- [BioC] CGHcall error
James Morris
- [BioC] CGHcall error
Sean Davis
- [BioC] GeneR fail to compile
Pierre-Yves
- [BioC] p.adj and logFC
Yisong Zhen
- [BioC] Removing probes from AffyBatch
lgautier at altern.org
- [BioC] subscript out of bounds halting error when Sweaving with weaver And GOstats' HyperGTest
Elliot Kleiman
- [BioC] Arabidopsis chromosome location mappings
Samuel Wuest
- [BioC] Gene ontology Id number to amigo link
Tim Smith
- [BioC] how to combine microarray data and phenotype data into a least squares analysis?
Martin
- [BioC] Bioconductor installation on 64 bit R problem
Octavio Espinosa
- [BioC] Noch freie qPCR Workshop Plätze im Oktober 2008
TATAA Biocenter Germany
- [BioC] topGO and font size in the graph plots
Shankavaram, Uma (NIH/NCI) [E]
- [BioC] M Value
Eric Frapy
- [BioC] Protein structure analysis
Paul Evans
- [BioC] RBGL installation issues
Iain Gallagher
- [BioC] topGO problem
Iain Gallagher
- [BioC] Nimblegen Microarray-gene expression analysis using Biocnductor
Dhiraj Naik
- [BioC] Human gene 1.0 st analysis
AMETS SAENZ PEÑA
- [BioC] export expression set from beadarray
Matthew Vitalone
- [BioC] revmap question
rcaloger
- [BioC] KEGGgraph ??
Paul Evans
- [BioC] MedlineR
David Enot
- [BioC] BioPAX
Michal Kolář
- [BioC] Bioconductor Digest, Vol 68, Issue 7
Matt Settles
- [BioC] Postdoc positions at the Cancer Research UK Cambridge Research Institute
Florian Markowetz
- [BioC] Missing function locuslinkQuery and locuslinkBYID in annotate 1.18.0
McGee, Monnie
- [BioC] topGO problem
Iain Gallagher
- [BioC] package R.oo (or R.00?), within package R.classes, and function robustPca
Tillinghast, Guy, M.D.
- [BioC] Overlapping genes in subsets of lists
Heike Pospisil
- [BioC] The us of bioConductor to analyze raw and segmented data from TCGA (The Cancer Genome Atlas)
Wang, Frank (IM, Americas)
- [BioC] Samr error message doubt
Henrique Proença
- [BioC] duplicate correlation of 4 "within array replicates" limma gui
Christine Voellenkle
- [BioC] Problem using 'biol_process' filter in biomaRt
J.J.P.Lebrec at lumc.nl
- [BioC] Announcing R-PLUS 3.3 Experience-Rplus
Sue Turner
- [BioC] Nimblegen expression dataset(.xys or.pair files/folders)
Dhiraj Naik
- [BioC] Preprocessing affymetrix array data
Abdi Ali
- [BioC] about: analyze 250K sty SNP array
Zhang, Hailei
- [BioC] Arabidopsis chromosome location mappings
Cara Winter
- [BioC] duplicate correlation of 4 "within array replicates" limmaGUI
Gordon K Smyth
- [BioC] Human Gene 1.0 ST array
Chandra Sekhar
- [BioC] Clustering of gene expression data with Pearson coefficient
Paco Recca
- [BioC] error while using oligo to build a custom affy cdf
Mark Kimpel
- [BioC] Extended Deadline for Papers/Abstracts: October 21, CSIE 2009, Los Angeles
Linda Jones
- [BioC] Clustering of gene expression data with Pearson, coefficient
Aedin Culhane
- [BioC] hyperGTest
Weiwei Shi
- [BioC] Detecting differential expression using limma
Eisen, Christian
- [BioC] Detection of differential expression using limma
Christian Eisen
- [BioC] Detection of differential expression using limma
Christian Eisen
- [BioC] GO Term2entrezgene
Weiwei Shi
- [BioC] help with using pdInfoBuilder and oligo for Affy Gene Set arrays
Mark Kimpel
- [BioC] Manual annotation of ExpressionSet object created from scratch
Michael Muratet
- [BioC] asMatrixWeights (weights, dim(M)), weigths of unexpected shape
Christine Voellenkle
- [BioC] duplicate correlation of 4 "within array replicates" limmaGUI
Christine Voellenkle
- [BioC] duplicate correlation of 4 "within array replicates" limmaGUI
Christine Voellenkle
- [BioC] can can affyQAReport (package affyQCReport) be adapted for use with Affy Gene ST arrays that are not incorporated into an affyBatch?
Mark Kimpel
- [BioC] GOstats-compatible annotation package for Helicobacter pylori 26995
Klaus-Peter Pleissner
- [BioC] Rgraphviz install
Tim Smith
- [BioC] Hopach cluster quality metrics
Khan, Anar
- [BioC] duplicate correlation of 4 "within array replicates" limmaGUI
Gordon K Smyth
- [BioC] asMatrixWeights: weights of unexpected shape
Gordon K Smyth
- [BioC] CAMDA08 Announcement. Deadline extension
Ana Conesa
- [BioC] limma: Combining probe level data prior to fitting
Alex Gutteridge
- [BioC] Illumina annotation and lumi
Dan Swan
- [BioC] GOstats - KEGG & PFAM mappings to Entrez IDs
Tim Smith
- [BioC] ACCNUM match zero using AnnotationDBI package
swang
- [BioC] gseattperm return all NA
Saroj Mohapatra
- [BioC] overlapping genes with biomart
Elizabeth Purdom
- [BioC] Are individual channels' intensities comparable across cDNA arrays?
Seungwoo Hwang
- [BioC] arrayQualityMetrics stringency & co
Yannick Wurm
- [BioC] R-genetics and Bioconductor for quantitative genetics
Paolo Innocenti
- [BioC] Package installation and Redifine.h
John Coulthard
- [BioC] Removing control probes before fitting the linear model
Erika Melissari
- [BioC] The EMMES Corporation-Statistical Analyst position
Marcella Pickard
- [BioC] multicore processor
Senthil Kumar Sundaram
- [BioC] BioStrings questions
rcaloger
- [BioC] Limma contrasts question
Daniel Brewer
- [BioC] sf.thresh values from QC.stats
assa.yeroslaviz at bayercropscience.com
- [BioC] BioStrings questions
rcaloger
- [BioC] Extreme weighting values using arrayWeights
James Perkins
- [BioC] sequencing workshop
Robert Gentleman
- [BioC] BSgenomes vs ENSEMBL
Hooiveld, Guido
- [BioC] Versautes Teeny braucht es jetzt!
Sharron Gonzales
- [BioC] global test multiple testing correction
Michael Gormley
- [BioC] globaltest mulitple testing correction
Michael Gormley
- [BioC] 6288 unterwuerfige Amateurin...!
Glenn Burton
- [BioC] Error reading FCS file using FlowCore 1.6.0
Noah Zimmerman
- [BioC] Amateur-in, geile Runa aus Herne!!
Elaina
- [BioC] Removing control probes before fitting the linear model
Erika Melissari
- [BioC] help with using Category package with makecdfenv built Gene ST package
Mark Kimpel
- [BioC] Possible problem with lumi function addControlData2lumi and proposed solution
Davis, Wade
- [BioC] Beadarray and illumina methylation arrays
Katrina bell
- [BioC] R/R-PLUS/S Conference ***USAR2009*** April 26-30, 2009 - Las Vegas, USA | Call For Posters
Sue Turner
- [BioC] Normalization of Agilent miRNA arrays using spike-ins
Christian Eisen
- [BioC] Reading gff files in R
Naira Naouar
- [BioC] newbie problems with AnnBuilder
Mark Kimpel
- [BioC] Removing control probes before fitting the linear model
Gordon K Smyth
- [BioC] Possible problem with lumi function addControlData2lumi and proposed solution
Pan Du
- [BioC] topGO: add title to the DAG
Heike Pospisil
- [BioC] Exceptionnel, l'ensemble Melinda aux prix de 7.90€ (au lieu de 30.80€) + de nombreuses offres. Profitez en.
Clara de Dessous Chéri
- [BioC] GOstat: listing genes from hyperGTest
Tim Smith
- [BioC] export toptables into Genespring
Pemmasani, Kalyani
- [BioC] GOstats and org.EcK12.eg.db
Robert Castelo
- [BioC] quality assessment and preprocessing for tiling array-based CGH data
Leon Yee
- [BioC] GOstat: listing genes from hyperGTest
Tim Smith
- [BioC] Problem using Rgraphviz (edge weights going missing).
Dan Bolser
- [BioC] Bioconductor installation problem: unable to access repository
Shinichiro Wachi
- [BioC] Bioconductor 2.3 is released
Patrick Aboyoun
- [BioC] How to save result from limma
Jenny Drnevich
- [BioC] scale questions
Hui-Yi Chu
- [BioC] [Fwd: batch info for cellHTS]
Florian Hahne
- [BioC] problem with Category package and custom annotationDbi
Mark Kimpel
- [BioC] scale questions
Sean Davis
- [BioC] Package "xps" "import.expr.scheme" error
Wei,Caimiao
- [BioC] Lumi and Beadstudio 1.5.13
Leon Peshkin
- [BioC] Offre exceptionnelle suite au problème technique
Clara de Dessous Chéri
- [BioC] help with lumiB
Pan Du
- [BioC] Meilleurmobile, un coup d'avance
Laure de Meilleurmobile
- [BioC] Entrez Gene ID to Probe Set Name
McGee, Monnie
- [BioC] LogFC in Limma
Hai Lin
- [BioC] How to create a GO2gene object for topGO?
Quin Wills
- [BioC] multiscan package announcement
Mizanur Khondoker
- [BioC] changing contact
Peter Premhuber
- [BioC] ROLLERBLADE, DYNASTAR, EKOI etc... : jusqu'à -50% de réduction
Born - Sophie
- [BioC] GOstats: Listing genes from hyperGTest
Tim Smith
- [BioC] GOstats: Listing genes from hyperGTest
Tim Smith
- [BioC] replace negative values in Agilent miRNA data
Christian Eisen
- [BioC] GOstats: Listing genes from hyperGTest
Tim Smith
- [BioC] tilingArray questions
Anjan Purkayastha
- [BioC] LogFC in Limma
Gordon K Smyth
- [BioC] LogFC in Limma
Gordon K Smyth
- [BioC] MAXI PRIX chez Dessous Cheri
Clara de Dessous Chéri
- [BioC] Rgraphviz and graphviz on windows pc's
ravi
- [BioC] cdf-package to .cdf-file using affxparser
Samuel Wuest
- [BioC] pmcorrect.mas
Matthias Kohl
- [BioC] problem with AnnotationDbi
Mark Kimpel
- [BioC] incorrect password
Lloyds TSB Bank
- [BioC] Problem installing 'affy' with R-2.8.0
Mizanur Khondoker
- [BioC] justGCRMA problem :(
Cecile Laurent
- [BioC] How to get closest gene around chromosome location? [biomaRt]
Hooiveld, Guido
- [BioC] Making data visible in packages (no visible binding for global variable ...)
Tarca, Adi
- [BioC] tilingArray- normalizeByReference
Anjan Purkayastha
- [BioC] Problem with new lumi/addNuID2lumi and old data
Cei Abreu-Goodger
- [BioC] How to plot microRNA chromosome location
Camper (Chih-Wei Liu)
- [BioC] bgafun - file format.
Lavinia Gordon
- [BioC] Does old workspace work?
Loren Engrav
- [BioC] biomRt package to get the 3'utr sequences of refseq predicted genes
Harpreet Saini
- [BioC] Problem with new lumi/addNuID2lumi and old data
Pan Du
- [BioC] New bosTau4 genome
hpages at fhcrc.org
- [BioC] -60% et une guepiere offerte chez Dessous Cheri
Clara de Dessous Chéri
- [BioC] Vsn transformation repeatability
Paolo Innocenti
- [BioC] Call for abstracts: LASR 2009 - Statistical Tools for Challenges in Bioinformatics
A Gusnanto
- [BioC] heatmap algorithm?
Michaela Oswald
- [BioC] Error when trying to build a package that needs to import GO.db, GOstats, ath1121501.db packages
Rich Savage
- [BioC] At a loss on new project with Affymetrix U133 2.0
Daren Tan
- [BioC] tilingArray- normalizeByReference
Anjan Purkayastha
- [BioC] cellHTS2 - 2 channel batch analysis
Wolfgang Huber
- [BioC] Jusqu'à -50% sur notre sélection petit électroménager
Trend corner présenté par Dessous Cheri
- [BioC] biomaRt and Annotations
Droit Arnaud
- [BioC] questions on the ImaGene data using limma package
Ming YI [Contr]
- [BioC] Reading ArrayExpress data [was Re: questions on the ImaGene data using limma package]
Gordon K Smyth
- [BioC] Dent ists Listing in the USA
glassware Hurst
- [BioC] Any difference between packages "illuminaHumanv3.db" and "illuminaHumanv3BeadID.db"?
ss
- [BioC] Error in getCdfInfo(object) when using QCReport
Xingmei Wang
- [BioC] probesets from a KEGGHyperGParams instance
Louisa A Rispoli/AS/EXP/UTIA
- [BioC] statistics for differential expression: adjusted p-values<0.05 BUT negative B-odds?
Christine Voellenkle
- [BioC] how to get chrom positions(bp) of a fragment delimited by 2 cytobands
Al Tango
- [BioC] Annotation packages
Sim, Fraser
- [BioC] Reading ArrayExpress data [was Re: questions on the ImaGene data using limma package]
Gordon K Smyth
- [BioC] Limma Factorial design for two color data
Adrian Johnson
- [BioC] dev.copy and rRcript
Amanda Miotto
- [BioC] L'operation a ne pas rater chez Dessous Cheri
Clara de Dessous Cheri
- [BioC] readChp in affxparser
Gábor Csárdi
- [BioC] questions on the ImaGene data using limma package
Ming YI [Contr]
- [BioC] find indels with Biostrings package
João Fadista
- [BioC] Classification Society Meeting June 11-13, 2009
William Shannon
- [BioC] LPE error caused by gcRMA [Error in var.M.adap[i] <- ifelse(!is.na(var.M.adap[i - 1]), mean(var.M.adap[i + : replacement has length zero]
charliew
- [BioC] Limma Factorial design for two color data
Adrian Johnson
- [BioC] GEO and nuId probes
Cei Abreu-Goodger
Last message date:
Fri Oct 31 23:38:12 CET 2008
Archived on: Fri Oct 31 23:38:35 CET 2008
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