[BioC] find indels with Biostrings package

[Patrick Aboyoun]

João,
The pairwiseAlignment function in the Biostrings package can find indels 
in alignments. The Alignments vignette in the Biostrings package gives a 
comprehensive overview of using this function. See if this meets your needs.


Patrick


João Fadista wrote:
> Hi,
>  
> I would like to know if there is any function that can extend the function matchPattern (Biostrings package) to be able to also find indels of any given size. 
>  
>
>
> Best regards
>
> João Fadista
> Ph.d. student
>
>
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