[BioC] RBGL installation issues

[Robert Gentleman]

Hi Iain,
  Probably the reason for no response is that you have not given 
sufficient details for anyone to help.

   Did you use biocLite, and if so, could you show us a bit more than 
you are? And if you did not - would you please try that, as it is the 
recommended route.

  best wishes
    Robert


Iain Gallagher wrote:
> Hi 
> 
> I posted this a few hours ago on the R-help list but have had no replies. I thought it might be better here. Apologies for cross posting.
> 
> I'm trying to install the RBGL package in order to install GOstats. However I am getting
> the following error; can anybody shed some light on what I'm missing?
> 
> /usr/lib/gcc/i486-linux-gnu/4.1.2/../../../../include/c++/4.1.2/cstdlib:135: error: ‘::system’ has not been declared
> 
> Thanks.
> 
> Iain
> 
>> sessionInfo()
> R version 2.7.2 (2008-08-25) 
> i486-pc-linux-gnu 
> 
> locale:
> LC_CTYPE=en_GB.UTF-8;LC_NUMERIC=C;LC_TIME=en_GB.UTF-8;LC_COLLATE=en_GB.UTF-8;LC_MONETARY=C;LC_MESSAGES=en_GB.UTF-8;LC_PAPER=en_GB.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_GB.UTF-8;LC_IDENTIFICATION=C
> 
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base     
> 
> loaded via a namespace (and not attached):
> [1] tcltk_2.7.2 tools_2.7.2
> 	[[alternative HTML version deleted]]
> 
> 
> 
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-- 
Robert Gentleman, PhD
Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M2-B876
PO Box 19024
Seattle, Washington 98109-1024
206-667-7700
rgentlem at fhcrc.org