[BioC] heatmap algorithm?

[Wolfgang Huber]

29/10/2008 13:23 Yannick Wurm scripsit
> Try setting the option Colv=NA as in:
> heatmap(fitMvsMT0$coefficients[myGenes,], Colv=NA)
> 
> and ?heatmap
> 
> you may also find that heatmap.2 which you can get in the gplots library
> is more flexible/prettier
> 


... as is the example code at the bottom of:

 library(latticeExtra)
 ? dendrogramGrob

Best wishes
 Wolfgang

------------------------------------------------------------------
Wolfgang Huber  EBI/EMBL  Cambridge UK  http://www.ebi.ac.uk/huber



> best,
> 
> yannick
> 
> 
> --------------------------------------------
>          yannick . wurm @ unil . ch
> Ant Genomics, Ecology & Evolution @ Lausanne
>   http://www.unil.ch/dee/page28685_fr.html
> 
> 
> On Oct 29, 2008, at 14:09 , Michaela Oswald wrote:
> 
>> Hi!
>>
>> I am new to bioconductor: what bi-clustering algorithm is behind the
>> function "heatmap"? Plus, is it possible to enforce that the order of
>> timepoints remains intact?
>>
>> Thanks, Michaela
>>
>>
>> ###
>> "A new scientific truth does not triumph by convincing its opponents
>> and making them see the light, but rather because its opponents
>> eventually  die and a new generation grows up that is familiar with it."
>>
>> -- Max Planck
>>