[BioC] Bioconductor installation problem: unable to access repository

Shinichiro Wachi swachi at ucdavis.edu
Wed Oct 22 19:13:10 CEST 2008


I am installing Bioconductor on a new machine (Intel Mac running OSX 10.5.5), R
version is 2.8.0.

sudo R is used for this session.

These are the error messages I get:

source("http://bioconductor.org/biocLite.R")
biocinstall()

Running biocinstall version 2.3.8 with R version 2.8.0 (under development)
Your version of R requires version 2.3 of Bioconductor.
Warning: unable to access index for repository
http://bioconductor.org/packages/2.3/bioc/bin/macosx//contrib/2.8
Warning: unable to access index for repository
http://bioconductor.org/packages/2.3/data/annotation/bin/macosx//contrib/2.8
Warning: unable to access index for repository
http://bioconductor.org/packages/2.3/data/experiment/bin/macosx//contrib/2.8
Warning: unable to access index for repository
http://bioconductor.org/packages/2.3/extra/bin/macosx//contrib/2.8
Warning: unable to access index for repository
http://cran.fhcrc.org/bin/macosx//contrib/2.8
Warning message:
package 'Biobase' is not available 

http://bioconductor.org/packages/2.3/bioc/src/contrib/PACKAGES
will produce a web page displaying packages. (I read a post that asked for this.
I am assuming this was a quick server diagnostics).

Is there a problem with the server, or is this a temporary glitch in the
installer?  Is there a workaround?

Much thanks.

Shin



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