August 2009 Archives by thread
Starting: Sat Aug 1 00:15:21 CEST 2009
Ending: Mon Aug 31 19:19:02 CEST 2009
Messages: 455
- [BioC] pd.hugene.1.0.st.v1
Mark Robinson
- [BioC] Limma lmFit function and spot quality weights
Gordon K Smyth
- [BioC] Custom CDF Version 12 is released
Yair Benita
- [BioC] scoring matrices
mauede at alice.it
- [BioC] Custom CDF Version 12 is released
Groot, Philip de
- [BioC] RNAither - problem with accessing biomaRt
Kishor Tappita
- [BioC] Advice with edgeR
Paul Leo
- [BioC] Where to find alternate to R Tutorial?
vijay selvaraj
- [BioC] Analysing Agilent single color array
carissimo at tigem.it
- [BioC] LIMMA: Why does eBayes expression differ from observed?
Axel.Klenk at Actelion.Com
- [BioC] R: Minor problem with siggenes's command sam2excel when entrez=TRUE
Manca Marco (PATH)
- [BioC] BED15 format for rtracklayer
rcaloger
- [BioC] GEOquery installation problem
zhihua zhang
- [BioC] no 'strands' method on GenomicData in 2.5?
Paul Shannon
- [BioC] GEOquery installation problem
zhihua zhang
- [BioC] epigenomics
Kishor Tappita
- [BioC] Agi4x44PreProcess probe summarization bug?
Massimo Pinto
- [BioC] GO annotations
mauede at alice.it
- [BioC] Where is the Aymetrix MAS manual?
Peng Yu
- [BioC] selfmade annnotation package
Mayra Eduardoff
- [BioC] GetSeq function problems
Droit Arnaud
- [BioC] selfmade annnotation package
Sean Davis
- [BioC] selfmade annnotation package
Sean Davis
- [BioC] Bsgenome Zv7 sequence data
Hervé Pagès
- [BioC] makecdfenv's error (with MoGene-1_0-st-v1.r3.cdf)
Peng Yu
- [BioC] makecdfenv's error (with MoGene-1_0-st-v1.r3.cdf)
Peng Yu
- [BioC] An issue in flowCore-package (?)
Florian Hahne
- [BioC] Suggesting changing the "reply-to" field to the mailing list address.
Peng Yu
- [BioC] [Genome] "Error Unrecognized format line 1..." when using "Add Custom Tracks"
Peng Yu
- [BioC] Advice with edgeR
Paul Leo
- [BioC] Building an annotation data package - not Affymetrix
Lavinia Gordon
- [BioC] High Throughput RTqPCR data
jperkins at biochem.ucl.ac.uk
- [BioC] GOstats : Error in getUniverseHelper - No Entrez Gene ids left in universe
Benoit Ballester
- [BioC] contrast matrix
Erika Melissari
- [BioC] selfmade annnotation package
James MacDonald
- [BioC] Two interaction coefficients not estimable in limma's lmFit() in a 2^3 factorial design - does this change my contrast matrix now?
Massimo Pinto
- [BioC] How uninstall the BioC update in my home directory?
Peng Yu
- [BioC] Does this message means that I need to update R or BioC?
Peng Yu
- [BioC] Regarding merging technical spot replicates in microarray data for analysis
ankhee dutta
- [BioC] Error with EBImage package loading
Kishor Tappita
- [BioC] HealthCentral News Articles
Wesley Washington
- [BioC] Error with EBImage package loading
Kishor Tappita
- [BioC] unable to find an inherited method for function "arrayQualityMetrics", for signature "vsn"
Tonon Giovanni
- [BioC] Robust Spline Normalization
Mohamed Lajnef
- [BioC] retrieving mRNA sequences via biomaRt
Simon
- [BioC] Computing affinitiesError [Scanned.]
Wirawan
- [BioC] Error in AnnotationDbi 1.7.8
Simon Anders
- [BioC] makePdInfoPackage in preparation for RMA with oligo on Nimblegen Expression Arrays
Jack Schonbrun
- [BioC] Problems when access elements in mogene10stprobeset.db
Peng Yu
- [BioC] Annotation Tools package
Yingfang Tian
- [BioC] Bar plots with stacked columns marked with askterisks
dorothyc
- [BioC] Rafael Irizarry wins prestigious award
Naomi Altman
- [BioC] RNAi error
Kishor Tappita
- [BioC] Access densities in MAList object
Torsten Waldminghaus
- [BioC] Question about filtering genes when using siggenes
Manca Marco (PATH)
- [BioC] EBImage, Image to Signal Conversion
Kishor Tappita
- [BioC] anova and folf induction
press at cemb.edu.pk
- [BioC] Note on XPS for MoGene and RaGene arrays
cstrato
- [BioC] Warning when running biocLite with $R_LIBS been set
Peng Yu
- [BioC] How map probeset_id to gene_symbols or other annotation information?
Peng Yu
- [BioC] Examples outdated in "Bioinformatics and Computational Biology Solutions Using R and Bioconductor"
Peng Yu
- [BioC] Where is xtable?
Peng Yu
- [BioC] [R] How to show both the commands and the output on the screen?
Peng Yu
- [BioC] Examples outdated in "Bioinformatics and Computational Biology Solutions Using R and Bioconductor"
Heidi Dvinge
- [BioC] Pairwise Sequence Alignments
mauede at alice.it
- [BioC] hugene10st.db not available?
Mark Robinson
- [BioC] OT: van 't Veer (2002) classifier
Gad Abraham
- [BioC] model3 (mixed-effect) ANOVA in any bioc package?
Riccardo Rossi
- [BioC] From a list of annotated interesting genes to a list of GO's 'interesting' Biological Processes
Massimo Pinto
- [BioC] error with Two class paired in samr function
John Antonydas Gaspar
- [BioC] error with Two class paired in samr function
John Antonydas Gaspar
- [BioC] on-line documentation for package microRNA
mauede at alice.it
- [BioC] Is it possible to analyze GOs for lists of genes obtained from a "top-down" approach?
Manca Marco (PATH)
- [BioC] Fwd: error with Two class paired in samr function
John Antonydas Gaspar
- [BioC] output from function "matchSeeds"
mauede at alice.it
- [BioC] replicating BeadStudio background correction in lumi package
amit mandal
- [BioC] Reading GFF files into R and GenomeGraphs
Michael Dondrup
- [BioC] Call for papers and participants on Next Generation Sequencing (CAMDA 2009)
Pan Du
- [BioC] BioC 2.5 and BSgenome.Hsapiens.UCSC.hg19
Steve Lianoglou
- [BioC] modifying smoothScatter function
Monica Pisica
- [BioC] Inconsistency in RMA results from 'affy' and results from 'oligo'
Peng Yu
- [BioC] Inconsistency in RMA results from 'affy' and results from 'oligo'
Peng Yu
- [BioC] [R] Example scripts for R Manual
Peng Yu
- [BioC] A list, a matrix and impute.knn for making data for SAMR
John Herbert
- [BioC] Dear Abbey Online Customer
Abbey National Plc
- [BioC] R examples
Peng Yu
- [BioC] Dear Abbey Online Customer Secure your Savings with Abbey
Abbey National Plc
- [BioC] KEGGSOAP package
Glazko, Galina
- [BioC] [R] R help from command line
Peng Yu
- [BioC] Annotation Tools package
Brad Ander
- [BioC] support for miRNA-1_0?
Dick Beyer
- [BioC] [R] How to specify an addition Rprofile file for Rscript in the command line?
Peng Yu
- [BioC] How to compare GO results
Johannes Hanson
- [BioC] snapCGH plotting
Boris Umylny
- [BioC] edgeR: deDGE Fisher exact p-values
Daniel Brewer
- [BioC] Read big file!
Mohamed Lajnef
- [BioC] Read.maimages Error reading 'Genepix results file 2' version files
Deshmukh, Krupa
- [BioC] bioMart error when accessing database
Unger, Kristian
- [BioC] Grand destockage chez Dessous Cheri stock
Cadre de Santé Spécialités Chirurgicales
- [BioC] getSequence ensmebl biomaRt
Mayra Eduardoff
- [BioC] Rat Gene 1.0 ST
Germán González
- [BioC] standardized formats for RNAi screen datasets
Rajarshi Guha
- [BioC] ruby interface to R rsruby
D.Enrique ESCOBAR ESPINOZA
- [BioC] Illumina 1M
Veni Kurup
- [BioC] Affy huGENE ST arrays
George Heine
- [BioC] Rat Gene 1.0 ST
Germán González
- [BioC] Rat Gene 1.0 ST
Benilton Carvalho
- [BioC] How to compare GO results
Alex Sanchez
- [BioC] pairwiseAlignment and issue mapping
James Bullard
- [BioC] XPS crahses R session
Hooiveld, Guido
- [BioC] annFUN.gene2GO in topGO package
Leonor Palmeira
- [BioC] FW: XPS crahses R session
cstrato
- [BioC] [flowStats] bug?
selwyn quan
- [BioC] Ideas for plotting
Priscila Grynberg
- [BioC] "unexpected" result from IRanges::intersect
Steve Lianoglou
- [BioC] annFUN.gene2GO in topGO package
Leonor Palmeira
- [BioC] KEGGSOAP returning blank pages
Daniel Brewer
- [BioC] [resolved] xps compilation error on Debian squeeze/testing
Bogdan
- [BioC] Untrusted connection
Chintanu
- [BioC] Regarding Agi4x44PreProcess
shikha sinha
- [BioC] Regarding Agi4x44PreProcess
Tobias Straub
- [BioC] You Have 1 New Security Message Alert
Alliance & Leicester
- [BioC] oligo boxplot bug?
Farhad Imam
- [BioC] How to compare GO results
Alex Sanchez
- [BioC] Re annFUN.gene2GO in topGO package
Lavinia Gordon
- [BioC] replicating BeadStudio background correction in lumi package
amit mandal
- [BioC] Abnehmen ganz und gar ohne Sport
Dr. Gabi Reinberger
- [BioC] Merging RandData object with names on the IRanges part
Ulrike Goebel
- [BioC] exon exon junction library for human
shirley zhang
- [BioC] How to get the relative path with list.celfiles() from the oligo package?
Peng Yu
- [BioC] Annotation pacakge for Exon arrays?
Peng Yu
- [BioC] The usage of ls("package:hgu95av2.db") shown in AnnotationDbi.pdf
Peng Yu
- [BioC] Missing GeneSymbol and Name information in TopTable
Kai Treuner
- [BioC] How to get the type of a vector?
Peng Yu
- [BioC] Merging RandData object with names on the IRanges part
Ulrike Goebel
- [BioC] Illumina Custom Golden Gate Methylation. Normalization and statistics
r.kandimalla
- [BioC] Account Security Confirmation !
HSBC Bank PLC
- [BioC] duplicateCorrelation in limma
Giulio Di Giovanni
- [BioC] problem with Oligo package when analyzing SNP6.0
Ashley Lin
- [BioC] general CGH threshold question
Wolfgang Raffelsberger
- [BioC] Missing GeneSymbol and Name information in TopTable
Marc Carlson
- [BioC] preprocessing Affymetrix with threestep and expresso
Javier Pérez Florido
- [BioC] Online Job & Employment //Part Time Job//
BJ Ball Group
- [BioC] Standard deviation
Priscila Grynberg
- [BioC] Online Job & Employment //Part Time Job//
BJ Ball Group
- [BioC] chromosome ordering in cPlot()/cColor()
Axel.Klenk at Actelion.Com
- [BioC] pseudo median reference
sundar Venkat
- [BioC] cellHTS2 readPlateList
Jose Garcia-Bernardo
- [BioC] courses
Jonathan Sive
- [BioC] "topGOdata" object: How to supply gene scores with a predefined list of genes
Ochsner, Scott A
- [BioC] flowCore: Writing FCS files
Noah Zimmerman
- [BioC] cPlot
Lavinia Gordon
- [BioC] linear model for illumina Data(identifying differentially expressed genes)
Md.Mamunur Rashid
- [BioC] Ai Parchi della Riviera con l'Hotel Polo
Hotel Polo
- [BioC] Invitation to connect on LinkedIn
Lingsheng Dong
- [BioC] gcrma using deprecated package
Rullmann, J.A.C. (Ton)
- [BioC] Job opportunity -Australia
Paul Leo
- [BioC] Different gcrma output values after upgrade BioC 2.0 -> 2.4
Rullmann, J.A.C. (Ton)
- [BioC] Luminex Data Analysis, again
Axel.Klenk at Actelion.Com
- [BioC] limma for identifying differentially expressed genes from illumina data
Md.Mamunur Rashid
- [BioC] sequence-motif visuazation (motifs found with DNAString)
Glazko, Galina
- [BioC] gcrma using deprecated package
Rullmann, J.A.C. (Ton)
- [BioC] R-2.9.1/Bioconductor on RedHat Enterprise 5.3
Jessica Hunter
- [BioC] Mail Box Notification: You have one [1] secure unread Message From HSBC
HSBC Bank Plc
- [BioC] Mail Box Notification: You have one [1] secure unread Message From HSBC
HSBC Bank Plc
- [BioC] Different gcrma output values after upgrade BioC 2.0 -> 2.4
Rullmann, J.A.C. (Ton)
- [BioC] RMA values for Affy Mouse Exon array
Peter Saffrey
- [BioC] r-sig-s-admin at stat.math.ethz.ch braucht eine Diaet
Agnes-Kevin
- [BioC] 10 annuaires pour votre prospection commercial pour bioconductor
annuaire-perpetuel.pro
- [BioC] Job Vacancy (Your present job is not affected)
Fabric House Ltd
- [BioC] getting original CEL files from Dilution
Javier Pérez Florido
- [BioC] Gene-repeats
Chintanu
- [BioC] Rgraphviz: interactive graphs, how to map coordinates to plotted graph?
Rainer Machne
- [BioC] MAplot form arrayQualityMetrics
Ingunn Berget
- [BioC] local and remote biomaRt problems
Daniel Rico Rodriguez
- [BioC] Ringo package: error using computeRunningMedians function
Diego Villar
- [BioC] Position Closed
Yvonne Hargrove
Last message date:
Mon Aug 31 19:19:02 CEST 2009
Archived on: Mon Aug 31 19:19:34 CEST 2009
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