August 2009 Archives by author

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Starting: Sat Aug 1 00:15:21 CEST 2009
Ending: Mon Aug 31 19:19:02 CEST 2009
Messages: 455

• [BioC] courses   michael watson (IAH-C)
• [BioC] R: Minor problem with siggenes's command sam2excel when entrez=TRUE   Manca Marco (PATH)
• [BioC] R: epigenomics   Manca Marco (PATH)
• [BioC] R: GOstats : Error in getUniverseHelper - No Entrez Gene ids left in universe   Manca Marco (PATH)
• [BioC] R: Rafael Irizarry wins prestigious award   Manca Marco (PATH)
• [BioC] Question about filtering genes when using siggenes   Manca Marco (PATH)
• [BioC] Is it possible to analyze GOs for lists of genes obtained from a "top-down" approach?   Manca Marco (PATH)
• [BioC] R: Is it possible to analyze GOs for lists of genes obtained from a "top-down" approach?   Manca Marco (PATH)
• [BioC] R: cellHTS2 readPlateList   Manca Marco (PATH)
• [BioC] Does this message means that I need to update R or BioC?   Patrick Aboyoun
• [BioC] Does this message means that I need to update R or BioC?   Patrick Aboyoun
• [BioC] Does this message means that I need to update R or BioC?   Patrick Aboyoun
• [BioC] Error in AnnotationDbi 1.7.8   Patrick Aboyoun
• [BioC] pairwiseAlignment and issue mapping   Patrick Aboyoun
• [BioC] "unexpected" result from IRanges::intersect   Patrick Aboyoun
• [BioC] Merging RandData object with names on the IRanges part   Patrick Aboyoun
• [BioC] OT: van 't Veer (2002) classifier   Gad Abraham
• [BioC] OT: van 't Veer (2002) classifier   Gad Abraham
• [BioC] LIMMA: Why does eBayes expression differ from observed?   Axel.Klenk at Actelion.Com
• [BioC] Standard deviation   Axel.Klenk at Actelion.Com
• [BioC] chromosome ordering in cPlot()/cColor()   Axel.Klenk at Actelion.Com
• [BioC] chromosome ordering in cPlot()/cColor()   Axel.Klenk at Actelion.Com
• [BioC] chromosome ordering in cPlot()/cColor()   Axel.Klenk at Actelion.Com
• [BioC] Luminex Data Analysis, again   Axel.Klenk at Actelion.Com
• [BioC] r-sig-s-admin at stat.math.ethz.ch braucht eine Diaet   Agnes-Kevin
• [BioC] annFUN.gene2GO in topGO package   Adrian Alexa
• [BioC] "topGOdata" object: How to supply gene scores with a predefined list of genes   Adrian Alexa
• [BioC] "topGOdata" object: How to supply gene scores with a predefined list of genes   Adrian Alexa
• [BioC] Rafael Irizarry wins prestigious award   Naomi Altman
• [BioC] model3 (mixed-effect) ANOVA in any bioc package?   Naomi Altman
• [BioC] Annotation Tools package   Brad Ander
• [BioC] Annotation Tools package   Brad Ander
• [BioC] Error in AnnotationDbi 1.7.8   Simon Anders
• [BioC] GetSeq function problems   Droit Arnaud
• [BioC] sequence-motif visuazation (motifs found with DNAString)   Droit Arnaud
• [BioC] A list, a matrix and impute.knn for making data for SAMR   Elin Axelsson
• [BioC] cellHTS2 readPlateList   Elin Axelsson
• [BioC] cellHTS2 readPlateList   Elin Axelsson
• [BioC] cellHTS2 readPlateList   Elin Axelsson
• [BioC] GOstats : Error in getUniverseHelper - No Entrez Gene ids left in universe   Benoit Ballester
• [BioC] Read big file!   Carlos J. Gil Bellosta
• [BioC] How to get the relative path with list.celfiles() from the oligo package?   Henrik Bengtsson
• [BioC] getting original CEL files from Dilution   Henrik Bengtsson
• [BioC] Custom CDF Version 12 is released   Yair Benita
• [BioC] MAplot form arrayQualityMetrics   Ingunn Berget
• [BioC] support for miRNA-1_0?   Dick Beyer
• [BioC] support for miRNA-1_0?   Dick Beyer
• [BioC] [resolved] xps compilation error on Debian squeeze/testing   Bogdan
• [BioC] Rat Gene 1.0 ST   Ben Bolstad
• [BioC] edgeR: deDGE Fisher exact p-values   Daniel Brewer
• [BioC] edgeR: deDGE Fisher exact p-values   Daniel Brewer
• [BioC] KEGGSOAP returning blank pages   Daniel Brewer
• [BioC] courses   Jarek Bryk
• [BioC] pairwiseAlignment and issue mapping   James Bullard
• [BioC] Read big file!   Vincent Carey
• [BioC] GO annotations   Marc Carlson
• [BioC] makecdfenv's error (with MoGene-1_0-st-v1.r3.cdf)   Marc Carlson
• [BioC] GOstats : Error in getUniverseHelper - No Entrez Gene ids left in universe   Marc Carlson
• [BioC] Error in AnnotationDbi 1.7.8   Marc Carlson
• [BioC] GOstats : Error in getUniverseHelper - No Entrez Gene ids left in universe   Marc Carlson
• [BioC] Problems when access elements in mogene10stprobeset.db   Marc Carlson
• [BioC] Problems when access elements in mogene10stprobeset.db   Marc Carlson
• [BioC] How map probeset_id to gene_symbols or other annotation information?   Marc Carlson
• [BioC] How map probeset_id to gene_symbols or other annotation information?   Marc Carlson
• [BioC] hugene10st.db not available?   Marc Carlson
• [BioC] Affy huGENE ST arrays   Marc Carlson
• [BioC] KEGGSOAP returning blank pages   Marc Carlson
• [BioC] Annotation pacakge for Exon arrays?   Marc Carlson
• [BioC] Missing GeneSymbol and Name information in TopTable   Marc Carlson
• [BioC] Annotation pacakge for Exon arrays?   Marc Carlson
• [BioC] Missing GeneSymbol and Name information in TopTable   Marc Carlson
• [BioC] gcrma using deprecated package   Marc Carlson
• [BioC] Missing GeneSymbol and Name information in TopTable   Marc Carlson
• [BioC] pd.hugene.1.0.st.v1   Carvalho, Benilton
• [BioC] Inconsistency in RMA results from 'affy' and results from 'oligo'   Benilton Carvalho
• [BioC] Rat Gene 1.0 ST   Benilton Carvalho
• [BioC] Rat Gene 1.0 ST   Benilton Carvalho
• [BioC] oligo boxplot bug?   Benilton Carvalho
• [BioC] How to get the relative path with list.celfiles() from the oligo package?   Benilton Carvalho
• [BioC] Annotation pacakge for Exon arrays?   Benilton Carvalho
• [BioC] How to get the relative path with list.celfiles() from the oligo package?   Benilton Carvalho
• [BioC] How to get the relative path with list.celfiles() from the oligo package?   Benilton Carvalho
• [BioC] How to get the relative path with list.celfiles() from the oligo package?   Benilton Carvalho
• [BioC] How to get the relative path with list.celfiles() from the oligo package?   Benilton Carvalho
• [BioC] problem with Oligo package when analyzing SNP6.0   Benilton Carvalho
• [BioC] scoring matrices   Tony Chiang
• [BioC] Error in AnnotationDbi 1.7.8   Tony Chiang
• [BioC] Untrusted connection   Chintanu
• [BioC] Gene-repeats   Chintanu
• [BioC] Grand destockage chez Dessous Cheri stock   Cadre de Santé Spécialités Chirurgicales
• [BioC] Custom CDF Version 12 is released   Manhong Dai
• [BioC] Where to find alternate to R Tutorial?   Sean Davis
• [BioC] selfmade annnotation package   Sean Davis
• [BioC] selfmade annnotation package   Sean Davis
• [BioC] selfmade annnotation package   Sean Davis
• [BioC] selfmade annnotation package   Sean Davis
• [BioC] Building an annotation data package - not Affymetrix   Sean Davis
• [BioC] Does this message means that I need to update R or BioC?   Sean Davis
• [BioC] Does this message means that I need to update R or BioC?   Sean Davis
• [BioC] Warning when running biocLite with $R_LIBS been set   Sean Davis
• [BioC] Warning when running biocLite with $R_LIBS been set   Sean Davis
• [BioC] How map probeset_id to gene_symbols or other annotation information?   Sean Davis
• [BioC] [R] How to show both the commands and the output on the screen?   Sean Davis
• [BioC] How map probeset_id to gene_symbols or other annotation information?   Sean Davis
• [BioC] Pairwise Sequence Alignments   Sean Davis
• [BioC] How map probeset_id to gene_symbols or other annotation information?   Sean Davis
• [BioC] Inconsistency in RMA results from 'affy' and results from 'oligo'   Sean Davis
• [BioC] [R] R help from command line   Sean Davis
• [BioC] [R] How to specify an addition Rprofile file for Rscript in the command line?   Sean Davis
• [BioC] Read big file!   Sean Davis
• [BioC] How to get the relative path with list.celfiles() from the oligo package?   Sean Davis
• [BioC] The usage of ls("package:hgu95av2.db") shown in AnnotationDbi.pdf   Sean Davis
• [BioC] The usage of ls("package:hgu95av2.db") shown in AnnotationDbi.pdf   Sean Davis
• [BioC] Missing GeneSymbol and Name information in TopTable   Sean Davis
• [BioC] How to get the relative path with list.celfiles() from the oligo package?   Sean Davis
• [BioC] How to get the type of a vector?   Sean Davis
• [BioC] Illumina Custom Golden Gate Methylation. Normalization and statistics   Sean Davis
• [BioC] Read.maimages Error reading 'Genepix results file 2' version files   Deshmukh, Krupa
• [BioC] Read.maimages Error reading 'Genepix results file 2' version files   Deshmukh, Krupa
• [BioC] Read.maimages Error reading 'Genepix results file 2' version files   Deshmukh, Krupa
• [BioC] Reading GFF files into R and GenomeGraphs   Michael Dondrup
• [BioC] Merging RandData object with names on the IRanges part   Michael Dondrup
• [BioC] sequence-motif visuazation (motifs found with DNAString)   Michael Dondrup
• [BioC] Invitation to connect on LinkedIn   Lingsheng Dong
• [BioC] Call for papers and participants on Next Generation Sequencing (CAMDA 2009)   Pan Du
• [BioC] Illumina 1M   Mark Dunning
• [BioC] GOstats : Error in getUniverseHelper - No Entrez Gene ids left in universe   Heidi Dvinge
• [BioC] Examples outdated in "Bioinformatics and Computational Biology Solutions Using R and Bioconductor"   Heidi Dvinge
• [BioC] Examples outdated in "Bioinformatics and Computational Biology Solutions Using R and Bioconductor"   Heidi Dvinge
• [BioC] modifying smoothScatter function   Heidi Dvinge
• [BioC] anova and folf induction   Heidi Dvinge
• [BioC] Standard deviation   Heidi Dvinge
• [BioC] ruby interface to R rsruby   D.Enrique ESCOBAR ESPINOZA
• [BioC] selfmade annnotation package   Mayra Eduardoff
• [BioC] selfmade annnotation package   Mayra Eduardoff
• [BioC] getSequence ensmebl biomaRt   Mayra Eduardoff
• [BioC] getSequence ensmebl biomaRt   Mayra Eduardoff
• [BioC] preprocessing Affymetrix with threestep and expresso   Javier Pérez Florido
• [BioC] preprocessing Affymetrix with threestep and expresso   Javier Pérez Florido
• [BioC] getting original CEL files from Dilution   Javier Pérez Florido
• [BioC] cellHTS2 readPlateList   Jose Garcia-Bernardo
• [BioC] cellHTS2 readPlateList   Jose Garcia-Bernardo
• [BioC] cellHTS2 readPlateList   Jose Garcia-Bernardo
• [BioC] cellHTS2 readPlateList   Jose Garcia-Bernardo
• [BioC] error with Two class paired in samr function   John Antonydas Gaspar
• [BioC] error with Two class paired in samr function   John Antonydas Gaspar
• [BioC] Fwd: error with Two class paired in samr function   John Antonydas Gaspar
• [BioC] Read big file!   Laurent Gautier
• [BioC] standardized formats for RNAi screen datasets   Laurent Gautier
• [BioC] preprocessing Affymetrix with threestep and expresso   Laurent Gautier
• [BioC] makecdfenv's error (with MoGene-1_0-st-v1.r3.cdf)   Robert Gentleman
• [BioC] GOstats : Error in getUniverseHelper - No Entrez Gene ids left in universe   Robert Gentleman
• [BioC] Is it possible to analyze GOs for lists of genes obtained from a "top-down" approach?   Robert Gentleman
• [BioC] duplicateCorrelation in limma   Giulio Di Giovanni
• [BioC] unable to find an inherited method for function "arrayQualityMetrics", for signature "vsn"   Tonon Giovanni
• [BioC] KEGGSOAP package   Glazko, Galina
• [BioC] sequence-motif visuazation (motifs found with DNAString)   Glazko, Galina
• [BioC] Merging RandData object with names on the IRanges part   Ulrike Goebel
• [BioC] Merging RandData object with names on the IRanges part   Ulrike Goebel
• [BioC] Merging RandData object with names on the IRanges part   Ulrike Goebel
• [BioC] Rat Gene 1.0 ST   Germán González
• [BioC] Rat Gene 1.0 ST   Germán González
• [BioC] Rat Gene 1.0 ST   Germán González
• [BioC] [flowStats] bug?   Nishant Gopalakrishnan
• [BioC] Building an annotation data package - not Affymetrix   Lavinia Gordon
• [BioC] Building an annotation data package - not Affymetrix   Lavinia Gordon
• [BioC] Re annFUN.gene2GO in topGO package   Lavinia Gordon
• [BioC] cPlot   Lavinia Gordon
• [BioC] cPlot   Lavinia Gordon
• [BioC] Custom CDF Version 12 is released   Groot, Philip de
• [BioC] Online Job & Employment //Part Time Job//   BJ Ball Group
• [BioC] Online Job & Employment //Part Time Job//   BJ Ball Group
• [BioC] Ideas for plotting   Priscila Grynberg
• [BioC] Ideas for plotting   Priscila Grynberg
• [BioC] Standard deviation   Priscila Grynberg
• [BioC] Standard deviation   Priscila Grynberg
• [BioC] standardized formats for RNAi screen datasets   Rajarshi Guha
• [BioC] standardized formats for RNAi screen datasets   Rajarshi Guha
• [BioC] An issue in flowCore-package (?)   Florian Hahne
• [BioC] modifying smoothScatter function   Florian Hahne
• [BioC] cellHTS2 readPlateList   Florian Hahne
• [BioC] flowCore: Writing FCS files   Florian Hahne
• [BioC] Mail Box Notification: You have one [1] secure unread Message From HSBC   Thomas Hampton
• [BioC] Computing affinitiesError [Scanned.]   Kasper Daniel Hansen
• [BioC] How map probeset_id to gene_symbols or other annotation information?   Kasper Daniel Hansen
• [BioC] How to compare GO results   Johannes Hanson
• [BioC] Position Closed   Yvonne Hargrove
• [BioC] Affy huGENE ST arrays   George Heine
• [BioC] A list, a matrix and impute.knn for making data for SAMR   John Herbert
• [BioC] A list, a matrix and impute.knn for making data for SAMR   John Herbert
• [BioC] XPS crahses R session   Hooiveld, Guido
• [BioC] FW: XPS crahses R session   Hooiveld, Guido
• [BioC] FW: XPS crahses R session   Hooiveld, Guido
• [BioC] unable to find an inherited method for function "arrayQualityMetrics", for signature "vsn"   Wolfgang Huber
• [BioC] retrieving mRNA sequences via biomaRt   Wolfgang Huber
• [BioC] EBImage, Image to Signal Conversion   Wolfgang Huber
• [BioC] standardized formats for RNAi screen datasets   Wolfgang Huber
• [BioC] bioMart error when accessing database   Wolfgang Huber
• [BioC] cellHTS2 readPlateList   Wolfgang Huber
• [BioC] Rgraphviz: interactive graphs, how to map coordinates to plotted graph?   Wolfgang Huber
• [BioC] R-2.9.1/Bioconductor on RedHat Enterprise 5.3   Jessica Hunter
• [BioC] oligo boxplot bug?   Farhad Imam
• [BioC] standardized formats for RNAi screen datasets   Lakshmanan Iyer
• [BioC] bioMart error when accessing database   Rhoda Kinsella
• [BioC] Annotation Tools package   Alexandre Kuhn
• [BioC] Annotation Tools package   Alexandre Kuhn
• [BioC] Illumina 1M   Veni Kurup
• [BioC] Robust Spline Normalization   Mohamed Lajnef
• [BioC] Read big file!   Mohamed Lajnef
• [BioC] Read big file!   Mohamed Lajnef
• [BioC] no 'strands' method on GenomicData in 2.5?   Michael Lawrence
• [BioC] BED15 format for rtracklayer   Michael Lawrence
• [BioC] BED15 format for rtracklayer   Michael Lawrence
• [BioC] BED15 format for rtracklayer   Michael Lawrence
• [BioC] Merging RandData object with names on the IRanges part   Michael Lawrence
• [BioC] You Have 1 New Security Message Alert   Alliance & Leicester
• [BioC] Advice with edgeR   Paul Leo
• [BioC] Advice with edgeR   Paul Leo
• [BioC] Job opportunity -Australia   Paul Leo
• [BioC] Analysing Agilent single color array   Yong Li
• [BioC] GEOquery installation problem   Steve Lianoglou
• [BioC] GEOquery installation problem   Steve Lianoglou
• [BioC] GEOquery installation problem   Steve Lianoglou
• [BioC] How uninstall the BioC update in my home directory?   Steve Lianoglou
• [BioC] Regarding merging technical spot replicates in microarray data for analysis   Steve Lianoglou
• [BioC] output from function "matchSeeds"   Steve Lianoglou
• [BioC] BioC 2.5 and BSgenome.Hsapiens.UCSC.hg19   Steve Lianoglou
• [BioC] Inconsistency in RMA results from 'affy' and results from 'oligo'   Steve Lianoglou
• [BioC] Inconsistency in RMA results from 'affy' and results from 'oligo'   Steve Lianoglou
• [BioC] [R] How to specify an addition Rprofile file for Rscript in the command line?   Steve Lianoglou
• [BioC] ruby interface to R rsruby   Steve Lianoglou
• [BioC] "unexpected" result from IRanges::intersect   Steve Lianoglou
• [BioC] "unexpected" result from IRanges::intersect   Steve Lianoglou
• [BioC] exon exon junction library for human   Steve Lianoglou
• [BioC] exon exon junction library for human   Steve Lianoglou
• [BioC] exon exon junction library for human   Steve Lianoglou
• [BioC] How to get the relative path with list.celfiles() from the oligo package?   Steve Lianoglou
• [BioC] R-2.9.1/Bioconductor on RedHat Enterprise 5.3   Steve Lianoglou
• [BioC] problem with Oligo package when analyzing SNP6.0   Ashley Lin
• [BioC] problem with Oligo package when analyzing SNP6.0   Ashley Lin
• [BioC] Job Vacancy (Your present job is not affected)   Fabric House Ltd
• [BioC] selfmade annnotation package   James MacDonald
• [BioC] GEOquery installation problem   James W. MacDonald
• [BioC] How uninstall the BioC update in my home directory?   James W. MacDonald
• [BioC] contrast matrix   James W. MacDonald
• [BioC] Two interaction coefficients not estimable in limma's lmFit() in a 2^3 factorial design - does this change my contrast matrix now?   James W. MacDonald
• [BioC] getSequence ensmebl biomaRt   James W. MacDonald
• [BioC] getSequence ensmebl biomaRt   James W. MacDonald
• [BioC] Ideas for plotting   James W. MacDonald
• [BioC] pseudo median reference   James W. MacDonald
• [BioC] RMA values for Affy Mouse Exon array   James W. MacDonald
• [BioC] Rgraphviz: interactive graphs, how to map coordinates to plotted graph?   Rainer Machne
• [BioC] contrast matrix   Erika Melissari
• [BioC] How to get the relative path with list.celfiles() from the oligo package?   Saroj K Mohapatra
• [BioC] Problems when access elements in mogene10stprobeset.db   Martin Morgan
• [BioC] Problems when access elements in mogene10stprobeset.db   Martin Morgan
• [BioC] Problems when access elements in mogene10stprobeset.db   Martin Morgan
• [BioC] on-line documentation for package microRNA   Martin Morgan
• [BioC] Examples outdated in "Bioinformatics and Computational Biology Solutions Using R and Bioconductor"   Martin Morgan
• [BioC] Read big file!   Martin Morgan
• [BioC] Merging RandData object with names on the IRanges part   Martin Morgan
• [BioC] chromosome ordering in cPlot()/cColor()   Martin Morgan
• [BioC] chromosome ordering in cPlot()/cColor()   Martin Morgan
• [BioC] chromosome ordering in cPlot()/cColor()   Martin Morgan
• [BioC] cPlot   Martin Morgan
• [BioC] R-2.9.1/Bioconductor on RedHat Enterprise 5.3   Martin Morgan
• [BioC] "topGOdata" object: How to supply gene scores with a predefined list of genes   Ochsner, Scott A
• [BioC] "topGOdata" object: How to supply gene scores with a predefined list of genes   Ochsner, Scott A
• [BioC] Account Security Confirmation !   HSBC Bank PLC
• [BioC] scoring matrices   Philipp Pagel
• [BioC] GetSeq function problems   Hervé Pagès
• [BioC] Bsgenome Zv7 sequence data   Hervé Pagès
• [BioC] Problems when access elements in mogene10stprobeset.db   Hervé Pagès
• [BioC] BioC 2.5 and BSgenome.Hsapiens.UCSC.hg19   Hervé Pagès
• [BioC] annFUN.gene2GO in topGO package   Leonor Palmeira
• [BioC] annFUN.gene2GO in topGO package   Leonor Palmeira
• [BioC] annFUN.gene2GO in topGO package   Leonor Palmeira
• [BioC] Re annFUN.gene2GO in topGO package   Leonor Palmeira
• [BioC] Error with EBImage package loading   Gregoire Pau
• [BioC] Error with EBImage package loading   Gregoire Pau
• [BioC] Error with EBImage package loading   Gregoire Pau
• [BioC] OT: van 't Veer (2002) classifier   Francois Pepin
• [BioC] GEOquery installation problem   Tobias Petri
• [BioC] Read big file!   Steve Piccolo
• [BioC] Agi4x44PreProcess probe summarization bug?   Massimo Pinto
• [BioC] Two interaction coefficients not estimable in limma's lmFit() in a 2^3 factorial design - does this change my contrast matrix now?   Massimo Pinto
• [BioC] Two interaction coefficients not estimable in limma's lmFit() in a 2^3 factorial design - does this change my contrast matrix now?   Massimo Pinto
• [BioC] Two interaction coefficients not estimable in limma's lmFit() in a 2^3 factorial design - does this change my contrast matrix now?   Massimo Pinto
• [BioC] From a list of annotated interesting genes to a list of GO's 'interesting' Biological Processes   Massimo Pinto
• [BioC] modifying smoothScatter function   Monica Pisica
• [BioC] modifying smoothScatter function   Monica Pisica
• [BioC] modifying smoothScatter function   Monica Pisica
• [BioC] Dear Abbey Online Customer   Abbey National Plc
• [BioC] Dear Abbey Online Customer Secure your Savings with Abbey   Abbey National Plc
• [BioC] Mail Box Notification: You have one [1] secure unread Message From HSBC   HSBC Bank Plc
• [BioC] Mail Box Notification: You have one [1] secure unread Message From HSBC   HSBC Bank Plc
• [BioC] Ai Parchi della Riviera con l'Hotel Polo   Hotel Polo
• [BioC] general CGH threshold question   Wolfgang Raffelsberger
• [BioC] linear model for illumina Data(identifying differentially expressed genes)   Md.Mamunur Rashid
• [BioC] limma for identifying differentially expressed genes from illumina data   Md.Mamunur Rashid
• [BioC] Abnehmen ganz und gar ohne Sport   Dr. Gabi Reinberger
• [BioC] Read.maimages Error reading 'Genepix results file 2' version files   Matthew Ritchie
• [BioC] Read.maimages Error reading 'Genepix results file 2' version files   Matthew Ritchie
• [BioC] pd.hugene.1.0.st.v1   Mark Robinson
• [BioC] hugene10st.db not available?   Mark Robinson
• [BioC] edgeR: deDGE Fisher exact p-values   Mark Robinson
• [BioC] local and remote biomaRt problems   Daniel Rico Rodriguez
• [BioC] model3 (mixed-effect) ANOVA in any bioc package?   Riccardo Rossi
• [BioC] gcrma using deprecated package   Rullmann, J.A.C. (Ton)
• [BioC] Different gcrma output values after upgrade BioC 2.0 -> 2.4   Rullmann, J.A.C. (Ton)
• [BioC] gcrma using deprecated package   Rullmann, J.A.C. (Ton)
• [BioC] Different gcrma output values after upgrade BioC 2.0 -> 2.4   Rullmann, J.A.C. (Ton)
• [BioC] RMA values for Affy Mouse Exon array   Peter Saffrey
• [BioC] How to compare GO results   Alex Sanchez
• [BioC] How to compare GO results   Alex Sanchez
• [BioC] makePdInfoPackage in preparation for RMA with oligo on Nimblegen Expression Arrays   Jack Schonbrun
• [BioC] R: Minor problem with siggenes's command sam2excel when entrez=TRUE   Holger Schwender
• [BioC] no 'strands' method on GenomicData in 2.5?   Paul Shannon
• [BioC] Analysing Agilent single color array   Wei Shi
• [BioC] limma for identifying differentially expressed genes from illumina data   Wei Shi
• [BioC] Bar plots with stacked columns marked with askterisks   Fraser Sim
• [BioC] retrieving mRNA sequences via biomaRt   Simon
• [BioC] retrieving mRNA sequences via biomaRt   Simon
• [BioC] retrieving mRNA sequences via biomaRt   Simon
• [BioC] courses   Jonathan Sive
• [BioC] Limma lmFit function and spot quality weights   Gordon K Smyth
• [BioC] Agi4x44PreProcess probe summarization bug?   Tobias Straub
• [BioC] Regarding Agi4x44PreProcess   Tobias Straub
• [BioC] Regarding Agi4x44PreProcess   Tobias Straub
• [BioC] RNAither - problem with accessing biomaRt   Kishor Tappita
• [BioC] epigenomics   Kishor Tappita
• [BioC] Error with EBImage package loading   Kishor Tappita
• [BioC] Error with EBImage package loading   Kishor Tappita
• [BioC] Fwd: Error with EBImage package loading   Kishor Tappita
• [BioC] Error with EBImage package loading   Kishor Tappita
• [BioC] Error with EBImage package loading   Kishor Tappita
• [BioC] RNAi error   Kishor Tappita
• [BioC] EBImage, Image to Signal Conversion   Kishor Tappita
• [BioC] EBImage, Image to Signal Conversion   Kishor Tappita
• [BioC] Annotation Tools package   Yingfang Tian
• [BioC] Ringo package: error using computeRunningMedians function   Joern Toedling
• [BioC] Ringo package: error using computeRunningMedians function   Joern Toedling
• [BioC] Missing GeneSymbol and Name information in TopTable   Kai Treuner
• [BioC] Missing GeneSymbol and Name information in TopTable   Kai Treuner
• [BioC] Missing GeneSymbol and Name information in TopTable   Kai Treuner
• [BioC] Missing GeneSymbol and Name information in TopTable   Kai Treuner
• [BioC] Illumina Custom Golden Gate Methylation. Normalization and statistics   Tim Triche
• [BioC] snapCGH plotting   Boris Umylny
• [BioC] bioMart error when accessing database   Unger, Kristian
• [BioC] pseudo median reference   sundar Venkat
• [BioC] Ringo package: error using computeRunningMedians function   Diego Villar
• [BioC] Ringo package: error using computeRunningMedians function   Diego Villar
• [BioC] Ringo package: error using computeRunningMedians function   Diego Villar
• [BioC] Access densities in MAList object   Torsten Waldminghaus
• [BioC] HealthCentral News Articles   Wesley Washington
• [BioC] Computing affinitiesError [Scanned.]   Wirawan
• [BioC] Problems when access elements in mogene10stprobeset.db   Chao-Jen Wong
• [BioC] Illumina 1M   Chao-Jen Wong
• [BioC] KEGGSOAP returning blank pages   Chao-Jen Wong
• [BioC] gcrma using deprecated package   Zhijin Wu
• [BioC] Different gcrma output values after upgrade BioC 2.0 -> 2.4   Zhijin Wu
• [BioC] Where is the A ymetrix MAS manual?   Samuel Wuest
• [BioC] Where is the A ymetrix MAS manual?   Samuel Wuest
• [BioC] Where is the Aymetrix MAS manual?   Peng Yu
• [BioC] Where is the A ymetrix MAS manual?   Peng Yu
• [BioC] makecdfenv's error (with MoGene-1_0-st-v1.r3.cdf)   Peng Yu
• [BioC] makecdfenv's error (with MoGene-1_0-st-v1.r3.cdf)   Peng Yu
• [BioC] Suggesting changing the "reply-to" field to the mailing list address.   Peng Yu
• [BioC] [Genome] "Error Unrecognized format line 1..." when using "Add Custom Tracks"   Peng Yu
• [BioC] How uninstall the BioC update in my home directory?   Peng Yu
• [BioC] Does this message means that I need to update R or BioC?   Peng Yu
• [BioC] Does this message means that I need to update R or BioC?   Peng Yu
• [BioC] Does this message means that I need to update R or BioC?   Peng Yu
• [BioC] Problems when access elements in mogene10stprobeset.db   Peng Yu
• [BioC] Problems when access elements in mogene10stprobeset.db   Peng Yu
• [BioC] Problems when access elements in mogene10stprobeset.db   Peng Yu
• [BioC] Problems when access elements in mogene10stprobeset.db   Peng Yu
• [BioC] Problems when access elements in mogene10stprobeset.db   Peng Yu
• [BioC] Problems when access elements in mogene10stprobeset.db   Peng Yu
• [BioC] Problems when access elements in mogene10stprobeset.db   Peng Yu
• [BioC] Warning when running biocLite with $R_LIBS been set   Peng Yu
• [BioC] Warning when running biocLite with $R_LIBS been set   Peng Yu
• [BioC] How map probeset_id to gene_symbols or other annotation information?   Peng Yu
• [BioC] Examples outdated in "Bioinformatics and Computational Biology Solutions Using R and Bioconductor"   Peng Yu
• [BioC] Where is xtable?   Peng Yu
• [BioC] Where is xtable?   Peng Yu
• [BioC] [R] How to show both the commands and the output on the screen?   Peng Yu
• [BioC] How map probeset_id to gene_symbols or other annotation information?   Peng Yu
• [BioC] How map probeset_id to gene_symbols or other annotation information?   Peng Yu
• [BioC] How map probeset_id to gene_symbols or other annotation information?   Peng Yu
• [BioC] How map probeset_id to gene_symbols or other annotation information?   Peng Yu
• [BioC] Inconsistency in RMA results from 'affy' and results from 'oligo'   Peng Yu
• [BioC] Examples outdated in "Bioinformatics and Computational Biology Solutions Using R and Bioconductor"   Peng Yu
• [BioC] Examples outdated in "Bioinformatics and Computational Biology Solutions Using R and Bioconductor"   Peng Yu
• [BioC] Inconsistency in RMA results from 'affy' and results from 'oligo'   Peng Yu
• [BioC] Inconsistency in RMA results from 'affy' and results from 'oligo'   Peng Yu
• [BioC] Inconsistency in RMA results from 'affy' and results from 'oligo'   Peng Yu
• [BioC] Inconsistency in RMA results from 'affy' and results from 'oligo'   Peng Yu
• [BioC] [R] Example scripts for R Manual   Peng Yu
• [BioC] R examples   Peng Yu
• [BioC] [R] R help from command line   Peng Yu
• [BioC] [R] How to specify an addition Rprofile file for Rscript in the command line?   Peng Yu
• [BioC] How to get the relative path with list.celfiles() from the oligo package?   Peng Yu
• [BioC] How to get the relative path with list.celfiles() from the oligo package?   Peng Yu
• [BioC] Annotation pacakge for Exon arrays?   Peng Yu
• [BioC] The usage of ls("package:hgu95av2.db") shown in AnnotationDbi.pdf   Peng Yu
• [BioC] Annotation pacakge for Exon arrays?   Peng Yu
• [BioC] The usage of ls("package:hgu95av2.db") shown in AnnotationDbi.pdf   Peng Yu
• [BioC] How to get the relative path with list.celfiles() from the oligo package?   Peng Yu
• [BioC] How to get the relative path with list.celfiles() from the oligo package?   Peng Yu
• [BioC] How to get the relative path with list.celfiles() from the oligo package?   Peng Yu
• [BioC] How to get the relative path with list.celfiles() from the oligo package?   Peng Yu
• [BioC] How to get the type of a vector?   Peng Yu
• [BioC] flowCore: Writing FCS files   Noah Zimmerman
• [BioC] scoring matrices   mauede at alice.it
• [BioC] GO annotations   mauede at alice.it
• [BioC] Pairwise Sequence Alignments   mauede at alice.it
• [BioC] R: Pairwise Sequence Alignments   mauede at alice.it
• [BioC] on-line documentation for package microRNA   mauede at alice.it
• [BioC] output from function "matchSeeds"   mauede at alice.it
• [BioC] 10 annuaires pour votre prospection commercial pour bioconductor   annuaire-perpetuel.pro
• [BioC] High Throughput RTqPCR data   jperkins at biochem.ucl.ac.uk
• [BioC] anova and folf induction   press at cemb.edu.pk
• [BioC] pd.hugene.1.0.st.v1   cstrato
• [BioC] Note on XPS for MoGene and RaGene arrays   cstrato
• [BioC] support for miRNA-1_0?   cstrato
• [BioC] FW: XPS crahses R session   cstrato
• [BioC] [resolved] xps compilation error on Debian squeeze/testing   cstrato
• [BioC] FW: XPS crahses R session   cstrato
• [BioC] [resolved] xps compilation error on Debian squeeze/testing   cstrato
• [BioC] Bar plots with stacked columns marked with askterisks   dorothyc
• [BioC] Regarding merging technical spot replicates in microarray data for analysis   ankhee dutta
• [BioC] limma for identifying differentially expressed genes from illumina data   J.Oosting at lumc.nl
• [BioC] Is it possible to analyze GOs for lists of genes obtained from a "top-down" approach?   amit mandal
• [BioC] replicating BeadStudio background correction in lumi package   amit mandal
• [BioC] replicating BeadStudio background correction in lumi package   amit mandal
• [BioC] Gene-repeats   amit mandal
• [BioC] [flowStats] bug?   selwyn quan
• [BioC] Illumina Custom Golden Gate Methylation. Normalization and statistics   r.kandimalla
• [BioC] BED15 format for rtracklayer   rcaloger
• [BioC] BED15 format for rtracklayer   rcaloger
• [BioC] BED15 format for rtracklayer   rcaloger
• [BioC] Where to find alternate to R Tutorial?   vijay selvaraj
• [BioC] Regarding Agi4x44PreProcess   shikha sinha
• [BioC] retrieving mRNA sequences via biomaRt   Steffen at stat.Berkeley.EDU
• [BioC] Analysing Agilent single color array   carissimo at tigem.it
• [BioC] exon exon junction library for human   shirley zhang
• [BioC] exon exon junction library for human   shirley zhang
• [BioC] exon exon junction library for human   shirley zhang
• [BioC] exon exon junction library for human   shirley zhang
• [BioC] GEOquery installation problem   zhihua zhang
• [BioC] GEOquery installation problem   zhihua zhang
• [BioC] GEOquery installation problem   zhihua zhang
• [BioC] GEOquery installation problem   zhihua zhang
• [BioC] GEOquery installation problem   zhihua zhang

Last message date: Mon Aug 31 19:19:02 CEST 2009
Archived on: Mon Aug 31 19:19:34 CEST 2009

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