[BioC] Examples outdated in "Bioinformatics and Computational Biology Solutions Using R and Bioconductor"

[Heidi Dvinge]

Hi Peng,

in general, all the annotation package now have an ".db" ending to reflect
an underlying change to a database structure. In this particular case
you'd therefore want GO.db, but the same would apply to e.g. KEGG.db, and
all the chip annotation packages (moe430a.db, hgu133a.db,
mogene10stprobeset.db etc.).

Please see
http://www.bioconductor.org/packages/release/AnnotationData.html for all
the annotation packages.

Best
\Heidi


> Hi,
>
> The examples in "Bioinformatics and Computational Biology Solutions
> Using R and Bioconductor" are outdated. For example, I don't find the
> package "GO" in
> http://www.bioconductor.org/mogr/chapter-code/metaOverview.R
>
> I'm wondering if somebody can help updated the examples to reflect the
> changes in BioC in the last 4 years.
>
> Regards,
> Peng
>
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