[BioC] Building an annotation data package - not Affymetrix

Lavinia Gordon lavinia.gordon at mcri.edu.au
Wed Aug 5 10:28:39 CEST 2009


   Dear all
   I would like to use the package 'geneplotter' which requires a Bioconductor
   data package.
   I cannot see a Bioconductor data package for the Nimblegen HG18 promoter
   arrays, so I will need to make my own.
   Based on what I can see in the mailing list, I believe that I need to use
   AnnotationDbi, and modify the function makeProbePackage to read in NimbleGen
   (as opposed to Affymetrix data).
   Could  anyone confirm that I am on the right track?/show me any useful
   pointers?
   with many thanks for your time,
   Lavinia Gordon.

   Lavinia Gordon
   Research Officer
   Bioinformatics
   Murdoch Childrens Research Institute
   Royal Children's Hospital
   Flemington Road Parkville Victoria 3052 Australia
   telephone: +61 3 8341 6221
   [1]www.mcri.edu.au
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References

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