[BioC] Does this message means that I need to update R or BioC?

[Peng Yu]

Hi Patrick,

Would you please let me know what is the command to check the BioC version?

Regards,
Peng

On Wed, Aug 5, 2009 at 12:02 PM, Patrick Aboyoun<paboyoun at fhcrc.org> wrote:
> Peng,
> In addition to the versioning of R and Bioconductor packages, we also
> version the biocLite.R script on biocondunctor.org
>
> "biocinstall version 2.4.11" because we sometimes change the behavior of the
> functions in that script, such as which BioC packages are recommended, so
> providing the printout that you gave is ideal for us to pinpoint problems
> users encounter.
>
>
> Patrick
>
>
> Sean Davis wrote:
>>
>> On Wed, Aug 5, 2009 at 12:14 PM, Peng Yu <pengyu.ut at gmail.com> wrote:
>>
>>
>>>
>>> Hi,
>>>
>>> I got the following message. I don't understand what it means. Can
>>> somebody let me know its meaning?
>>>
>>>
>>>>
>>>>    source("http://bioconductor.org/biocLite.R")
>>>>    biocLite("pd.mogene.1.0.st.v1")
>>>>
>>>
>>> Running biocinstall version 2.4.11 with R version 2.9.0
>>> Your version of R requires version 2.4 of Bioconductor.
>>>
>>>
>>
>> Version 2.4 is the current release of bioconductor.  biocLite() will do
>> the
>> right thing, generally.  What you want to try to avoid is mixing
>> bioconductor versions together.  If you use biocLite() all the time, you
>> shouldn't have any problems.
>>
>> Sean
>>
>>        [[alternative HTML version deleted]]
>>
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>
>