[BioC] Annotation pacakge for Exon arrays?

[Marc Carlson]

And there is also a version of the package that is meant to be used in
release right here (not sure which version of things you are using):

http://www.bioconductor.org/packages/release/data/annotation/html/pd.moex.1.0.st.v1.html

  Marc


Marc Carlson wrote:
> Hi Peng,
>
> It depends on what kind of annotation package you are looking for.  If
> you want the kind used by oligo, then you probably want 
> pd.moex.1.0.st.v1  mogene10stprobeset.db  is more of a classic gene
> centric "probes" style package...
>
> You can see pd.moex.1.0.st.v1 here:
>
> http://www.bioconductor.org/packages/devel/data/annotation/html/pd.moex.1.0.st.v1.html
>
>
>   Marc
>
>
>
>
>
> Peng Yu wrote:
>   
>> Hi,
>>
>> I am looking the annotation file for Affymetrix GeneChip® Mouse Exon
>> 1.0 ST Array.
>>
>> I see the package mogene10stprobeset.db for GeneChip® Mouse Gene 1.0
>> ST Array. But I don't see the one for the Exon array.
>>
>> Regards,
>> Peng
>>
>> On Thu, Aug 20, 2009 at 4:55 PM, Benilton Carvalho<bcarvalh at jhsph.edu> wrote:
>>   
>>     
>>> you haven't described which exon array you want an annotation package for.
>>>
>>> but on this very same page you point us to you will find packages for:
>>>
>>> HuEx
>>> RaEx
>>> MoEx
>>>
>>> just search the page for these strings and you'll find the packages...
>>>
>>> but, again, remember that these will not give you summaries at the gene
>>> level just yet.
>>>
>>> b
>>>
>>> On Aug 20, 2009, at 6:46 PM, Peng Yu wrote:
>>>
>>>     
>>>       
>>>> Hi,
>>>>
>>>> I only find annotation package for Gene arrays. But I don't find any
>>>> package for Exon arrays. Can somebody let me know if there is some
>>>> annotation for Exon arrays some where else?
>>>>
>>>> http://bioconductor.org/packages/release/data/annotation/
>>>>
>>>> Regards,
>>>> Peng
>>>>
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>>>>         
>>>     
>>>       
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>>     
>
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