[BioC] Annotation pacakge for Exon arrays?

[Marc Carlson]

Hi Peng,

It depends on what kind of annotation package you are looking for.  If
you want the kind used by oligo, then you probably want 
pd.moex.1.0.st.v1  mogene10stprobeset.db  is more of a classic gene
centric "probes" style package...

You can see pd.moex.1.0.st.v1 here:

http://www.bioconductor.org/packages/devel/data/annotation/html/pd.moex.1.0.st.v1.html


  Marc





Peng Yu wrote:
> Hi,
>
> I am looking the annotation file for Affymetrix GeneChip® Mouse Exon
> 1.0 ST Array.
>
> I see the package mogene10stprobeset.db for GeneChip® Mouse Gene 1.0
> ST Array. But I don't see the one for the Exon array.
>
> Regards,
> Peng
>
> On Thu, Aug 20, 2009 at 4:55 PM, Benilton Carvalho<bcarvalh at jhsph.edu> wrote:
>   
>> you haven't described which exon array you want an annotation package for.
>>
>> but on this very same page you point us to you will find packages for:
>>
>> HuEx
>> RaEx
>> MoEx
>>
>> just search the page for these strings and you'll find the packages...
>>
>> but, again, remember that these will not give you summaries at the gene
>> level just yet.
>>
>> b
>>
>> On Aug 20, 2009, at 6:46 PM, Peng Yu wrote:
>>
>>     
>>> Hi,
>>>
>>> I only find annotation package for Gene arrays. But I don't find any
>>> package for Exon arrays. Can somebody let me know if there is some
>>> annotation for Exon arrays some where else?
>>>
>>> http://bioconductor.org/packages/release/data/annotation/
>>>
>>> Regards,
>>> Peng
>>>
>>> _______________________________________________
>>> Bioconductor mailing list
>>> Bioconductor at stat.math.ethz.ch
>>> https://stat.ethz.ch/mailman/listinfo/bioconductor
>>> Search the archives:
>>> http://news.gmane.org/gmane.science.biology.informatics.conductor
>>>       
>>     
>
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at stat.math.ethz.ch
> https://stat.ethz.ch/mailman/listinfo/bioconductor
> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
>
>