[BioC] sequence-motif visuazation (motifs found with DNAString)

[Droit Arnaud]

Hi,
We are currently under development  a package to visualize the sequence-motif.
Maybe you could help you in your analyze.

Best Regards

Arnaud.
On 27/08/09 11:17 AM, "Glazko, Galina" <Galina_Glazko at URMC.Rochester.edu> wrote:

Dear all,



I need an advice: I have a set of sequences together with motifs found
using DNAString function (Biostrings). Is there a package I can use to
visualize the matching, to make a picture similar to, e.g.:



                  Motif:NTTTTTTTCTTTTTTTNNNNNNN

ACGTTGCTATCGTATAAAAAAAAATTTTTTTTCTTTTTTTTTTTTTT

                        -60

Thank you!

Best regards

Galina








        [[alternative HTML version deleted]]

_______________________________________________
Bioconductor mailing list
Bioconductor at stat.math.ethz.ch
https://stat.ethz.ch/mailman/listinfo/bioconductor
Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor