[BioC] Affy huGENE ST arrays

[Marc Carlson]

Hi George,

It looks like you might need a cdf package for this platform.  You
should be able to generate a "hugene10stv1cdf" package pretty easily by
using the makcdfenv package:

http://www.bioconductor.org/packages/devel/bioc/html/makecdfenv.html

You would also need the source cdf files from Affy which could be found
here:

http://www.affymetrix.com/support/technical/byproduct.affx?product=hugene-1_0-st-v1



  Marc



 
George Heine wrote:
> Hi,
>
> I am trying to use the bioconductor affylmGUI package with affymetrix human
> GeneST 1.0 arrays.  However, it seems that the program is unable to find the
> .cdf file and give an error message indicating that library package
> hugene10stv1cdf can not be found. I verified that my version of affylmGUI is
> working properly by using .cel files from the affy u133 arrays.  In
> addition, I tried to use the ExpressionProfiler website at EMBL (
> http://www.ebi.ac.uk/expressionprofiler/), which used bioconductor, and I
> received the same error message.
>
> Any suggestions?
> Thanks,
> George
>
>
>
>
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