[BioC] Is it possible to analyze GOs for lists of genes obtained from a "top-down" approach?

[Robert Gentleman]

Hi Marco,
   both topGO and GOstats do this (somewhat differently),
best wishes
   Robert


Manca Marco (PATH) wrote:
> Dear Bioconductors,
> 
> good morning. I hope my email finds you well.
> 
> I would like to ask for your help concerning a task that I suppose being quite trivial but through which I am unable to find my way.
> 
> Is it possible to get GOIDs for lists of genes obtained from (as instance) webservices or published papers?
> 
> Reading annotate and GOstats' vignettes I can only find information about processing lists obtained by microarray analyses and organized as ExpressionSets...
> 
> Could you point me to any relevant reading?
> 
> Thank you in advance for your suggestions.
> 
> My best regards,
> Marco
> 
> 
> 

-- 
Robert Gentleman, PhD
Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M1-B514
PO Box 19024
Seattle, Washington 98109-1024
206-667-7700
rgentlem at fhcrc.org