[BioC] gcrma using deprecated package

[Zhijin Wu]

I believe you can still use it for now. IT does mean that I should 
revise the code to keep up with the changes though.

Thanks,
Jean Wu
Rullmann, J.A.C. (Ton) wrote:
> We recently installed R 2.9.0 and Bioconductor 2.4.1.
> When I run "gcrma" I get the following message:
> 
>   [begin message]
> Computing affinitiesLoading required package: matchprobes
> 
> *** Deprecation warning ***
> The matchprobes package is deprecated and will not be supported
> anymore starting with Bioconductor 2.4. Please switch to using the
> Biostrings package for efficient string manipulations. If you need
> to build a probe package, please see the makeProbePackage vignette
> in the AnnotationDbi package.
>   [end message]
> 
> Is there a problem with the installation, and if so, 
> what should be done to fix it?
> 
> Thanks!
> 
> Ton Rullmann
> Senior Research Scientist
> Project Leader Systems Biology
> Dept. Molecular Design and Informatics
> T: +31 412 661423
> F: +31 412 662539
> ton.rullmann at spcorp.com
> 
> Schering-Plough
> RK 2309
> PO Box 20
> 5340 BH Oss, The Netherlands
> www.schering-plough.com
> 
> 
> 
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-- 
------------------------------------
Zhijin (Jean) Wu
Assistant Professor of Biostatistics
Brown University, Box G-S121
Providence, RI  02912

Tel: 401 863 1230
Fax: 401 863 9182
http://www.stat.brown.edu/zwu