[BioC] standardized formats for RNAi screen datasets

[Rajarshi Guha]

Thanks for your comments. Being new to the field I was interested in  
looking for 'good practice' -    obviously, working in R the cellHTS  
reports are the easiest way to go

On Aug 17, 2009, at 4:30 PM, Wolfgang Huber wrote:

> Hi Rajarshi,
>
> In addition to that...:
>
> While not a 'standard' (whatever that means), the reports generated  
> by cellHTS2 (which include a number of raw data and metadata files)  
> is what I and some colleagues perceive as a 'reasonable' format for  
> dataset exchange.
>
> Note that 'data format' and 'minimal information about' are  
> different things, one is an implementation, and one is conceptual.
>
> 	Best wishes
> 	Wolfgang
>
> Laurent Gautier wrote:
>> http://mibbi.sourceforge.net/projects/MIARE/
>> (I'd also recommend you to browse the MIBBI pages; lots of  
>> interesting
>> thoughts there)
>> L.
>> On Fri, 2009-08-14 at 10:09 -0400, Rajarshi Guha wrote:
>>> Hi, this is not a statistical question, but I am looking for  
>>> standards
>>> governing exchange of RNAi screening datasets. I know that for DNA
>>> microarrays, MIAME exists. Is there something comparable for RNAi  
>>> screening
>>> data?
>>>
>>> Thanks,
>>>
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Rajarshi Guha  <rajarshi.guha at gmail.com>
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