[BioC] RNAi error
Kishor Tappita
kishor.tappita at gmail.com
Fri Aug 7 11:00:47 CEST 2009
Dear All,
When I am trying to perform mainAnalysis using RNAither. I get the
below error. Please help me in overcoming this issue.
Error in getBM(attributes = c("hgnc_symbol", goIDs), filters =
"hgnc_symbol", :
The query to the BioMart webservice returned an invalid result:
biomaRt expected a character string of length 1.
Please report this to the mailing list.
Below is my sessionInfo
> sessionInfo()
R version 2.9.1 (2009-06-26)
i386-pc-mingw32
locale:
LC_COLLATE=English_United States.1252;LC_CTYPE=English_United
States.1252;LC_MONETARY=English_United
States.1252;LC_NUMERIC=C;LC_TIME=English_United States.1252
attached base packages:
[1] grid stats graphics grDevices utils datasets
methods base
other attached packages:
[1] biomaRt_2.0.0 RNAither_1.4.1 prada_1.20.0
rrcov_0.5-02
[5] pcaPP_1.7 mvtnorm_0.9-7 robustbase_0.4-5
RColorBrewer_1.0-2
[9] RankProd_2.16.0 topGO_1.12.0 SparseM_0.80
GO.db_2.2.11
[13] RSQLite_0.7-1 DBI_0.2-4 AnnotationDbi_1.6.1
Biobase_2.4.1
[17] graph_1.22.2
loaded via a namespace (and not attached):
[1] annotate_1.22.0 geneplotter_1.22.0 lattice_0.17-25 limma_2.18.2
[5] MASS_7.2-47 RCurl_0.98-1 stats4_2.9.1 tools_2.9.1
[9] XML_2.5-1 xtable_1.5-5
Thanks,
Kishor
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