[BioC] Warning when running biocLite with $R_LIBS been set

[Peng Yu]

On Sat, Aug 8, 2009 at 11:05 AM, Sean Davis<seandavi at gmail.com> wrote:
>
>
> On Sat, Aug 8, 2009 at 11:52 AM, Peng Yu <pengyu.ut at gmail.com> wrote:
>>
>> Hi,
>>
>> Have $R_LIBS set. And I got the following warning, when install the
>> package with biocLite. Will there be any consequence of the warning?
>> How to get rid of the warning?
>
> Hi, Peng.
>
> The warning explains that the packages will be installed into the
> "/path/to/a/directory/that/I/have/access/to".  Is that what you wanted based
> on R_LIBS?  You can specify libs to get rid of the warning.

Hi Sean,

Yes, that path is what R_LIBS is set to. So this warning does not
really matter, right?

BTW, how to specify libs in biocLite? Can I specify a environment
variable (in my command shell, say bash) so that biocLite would take
it as 'libs' and does not generate a warning?

Regards,
Peng