August 2009 Archives by thread
      
      Starting: Sat Aug  1 00:15:21 CEST 2009
         Ending: Mon Aug 31 19:19:02 CEST 2009
         Messages: 455
     
- [BioC] pd.hugene.1.0.st.v1
 
Mark Robinson
- [BioC] Limma lmFit function and spot quality weights
 
Gordon K Smyth
- [BioC] Custom CDF Version 12 is released
 
Yair Benita
- [BioC] scoring matrices
 
mauede at alice.it
- [BioC] Custom CDF Version 12 is released
 
Groot, Philip de
- [BioC] RNAither - problem with accessing biomaRt
 
Kishor Tappita
- [BioC] Advice with edgeR
 
Paul Leo
- [BioC] Where to find alternate to R Tutorial?
 
vijay selvaraj
- [BioC] Analysing Agilent single color array
 
carissimo at tigem.it
- [BioC] LIMMA: Why does eBayes expression differ from observed?
 
Axel.Klenk at Actelion.Com
- [BioC] R: Minor problem with siggenes's command sam2excel when	entrez=TRUE
 
Manca Marco (PATH)
- [BioC] BED15 format for rtracklayer
 
rcaloger
- [BioC] GEOquery installation problem
 
zhihua zhang
- [BioC] no 'strands' method on GenomicData in 2.5?
 
Paul Shannon
- [BioC] GEOquery installation problem
 
zhihua zhang
- [BioC] epigenomics
 
Kishor Tappita
- [BioC] Agi4x44PreProcess probe summarization bug?
 
Massimo Pinto
- [BioC] GO annotations
 
mauede at alice.it
- [BioC] Where is the Aymetrix MAS manual?
 
Peng Yu
- [BioC] selfmade annnotation package
 
Mayra Eduardoff
- [BioC] GetSeq function problems
 
Droit Arnaud
- [BioC] selfmade annnotation package
 
Sean Davis
- [BioC] selfmade annnotation package
 
Sean Davis
- [BioC] Bsgenome Zv7 sequence data
 
Hervé Pagès
- [BioC] makecdfenv's error (with MoGene-1_0-st-v1.r3.cdf)
 
Peng Yu
- [BioC] makecdfenv's error (with MoGene-1_0-st-v1.r3.cdf)
 
Peng Yu
- [BioC] An issue in flowCore-package (?)
 
Florian Hahne
- [BioC] Suggesting changing the "reply-to" field to the mailing list	address.
 
Peng Yu
- [BioC] [Genome] "Error Unrecognized format line 1..." when	using "Add Custom Tracks"
 
Peng Yu
- [BioC] Advice with edgeR
 
Paul Leo
- [BioC] Building an annotation data package - not Affymetrix
 
Lavinia Gordon
- [BioC] High Throughput RTqPCR data
 
jperkins at biochem.ucl.ac.uk
- [BioC] GOstats : Error in getUniverseHelper - No Entrez Gene ids left in universe
 
Benoit Ballester
- [BioC] contrast matrix
 
Erika Melissari
- [BioC] selfmade annnotation package
 
James MacDonald
- [BioC] Two interaction coefficients not estimable in limma's	lmFit() in a 2^3 factorial design - does this change my	contrast matrix now?
 
Massimo Pinto
- [BioC] How uninstall the BioC update in my home directory?
 
Peng Yu
- [BioC] Does this message means that I need to update R or BioC?
 
Peng Yu
- [BioC] Regarding merging technical spot replicates in microarray	data for analysis
 
ankhee dutta
- [BioC] Error with EBImage package loading
 
Kishor Tappita
- [BioC] HealthCentral News Articles
 
Wesley Washington
- [BioC] Error with EBImage package loading
 
Kishor Tappita
- [BioC] unable to find an inherited method for function "arrayQualityMetrics", for signature "vsn"
 
Tonon Giovanni
- [BioC] Robust Spline Normalization
 
Mohamed Lajnef
- [BioC] retrieving mRNA sequences via biomaRt
 
Simon
- [BioC] Computing affinitiesError [Scanned.]
 
Wirawan
- [BioC] Error in AnnotationDbi 1.7.8
 
Simon Anders
- [BioC] makePdInfoPackage in preparation for RMA with oligo on Nimblegen Expression Arrays
 
Jack Schonbrun
- [BioC] Problems when access elements in mogene10stprobeset.db
 
Peng Yu
- [BioC] Annotation Tools package
 
Yingfang Tian
- [BioC] Bar plots with stacked columns marked with askterisks
 
dorothyc
- [BioC] Rafael Irizarry wins prestigious award
 
Naomi Altman
- [BioC] RNAi error
 
Kishor Tappita
- [BioC] Access densities in MAList object
 
Torsten Waldminghaus
- [BioC] Question about filtering genes when using siggenes
 
Manca Marco (PATH)
- [BioC] EBImage, Image to Signal Conversion
 
Kishor Tappita
- [BioC] anova and folf induction
 
press at cemb.edu.pk
- [BioC] Note on XPS for MoGene and RaGene arrays
 
cstrato
- [BioC] Warning when running biocLite with $R_LIBS been set
 
Peng Yu
- [BioC] How map probeset_id to gene_symbols or other annotation	information?
 
Peng Yu
- [BioC] Examples outdated in "Bioinformatics and Computational	Biology Solutions Using R and Bioconductor"
 
Peng Yu
- [BioC] Where is xtable?
 
Peng Yu
- [BioC] [R] How to show both the commands and the output on the	screen?
 
Peng Yu
- [BioC] Examples outdated in "Bioinformatics and Computational Biology Solutions Using R and Bioconductor"
 
Heidi Dvinge
- [BioC] Pairwise Sequence Alignments
 
mauede at alice.it
- [BioC] hugene10st.db not available?
 
Mark Robinson
- [BioC] OT: van 't Veer (2002) classifier
 
Gad Abraham
- [BioC] model3 (mixed-effect) ANOVA in any bioc package?
 
Riccardo Rossi
- [BioC] From a list of annotated interesting genes to a list of GO's	'interesting' Biological Processes
 
Massimo Pinto
- [BioC] error with Two class paired in samr function
 
John Antonydas Gaspar
- [BioC] error with Two class paired in samr function
 
John Antonydas Gaspar
- [BioC] on-line documentation for package microRNA
 
mauede at alice.it
- [BioC] Is it possible to analyze GOs for lists of genes obtained from a "top-down" approach?
 
Manca Marco (PATH)
- [BioC] Fwd: error with Two class paired in samr function
 
John Antonydas Gaspar
- [BioC] output from function "matchSeeds"
 
mauede at alice.it
- [BioC] replicating BeadStudio background correction in lumi package
 
amit mandal
- [BioC] Reading GFF files into R and GenomeGraphs
 
Michael Dondrup
- [BioC] Call for papers and participants on Next Generation Sequencing (CAMDA 2009)
 
Pan Du
- [BioC] BioC 2.5 and BSgenome.Hsapiens.UCSC.hg19
 
Steve Lianoglou
- [BioC] modifying smoothScatter function
 
Monica Pisica
- [BioC] Inconsistency in RMA results from 'affy' and results from	'oligo'
 
Peng Yu
- [BioC] Inconsistency in RMA results from 'affy' and results	from 'oligo'
 
Peng Yu
- [BioC] [R] Example scripts for R Manual
 
Peng Yu
- [BioC] A list, a matrix and impute.knn for making data for SAMR
 
John Herbert
- [BioC] Dear Abbey Online Customer
 
Abbey National Plc
- [BioC] R examples
 
Peng Yu
- [BioC] Dear Abbey Online Customer Secure your Savings with Abbey
 
Abbey National Plc
- [BioC] KEGGSOAP package
 
Glazko, Galina
- [BioC] [R] R help from command line
 
Peng Yu
- [BioC] Annotation Tools package
 
Brad Ander
- [BioC] support for miRNA-1_0?
 
Dick Beyer
- [BioC] [R] How to specify an addition Rprofile file for Rscript	in the command line?
 
Peng Yu
- [BioC] How to compare GO results
 
Johannes Hanson
- [BioC] snapCGH plotting
 
Boris Umylny
- [BioC] edgeR: deDGE Fisher exact p-values
 
Daniel Brewer
- [BioC] Read big file!
 
Mohamed Lajnef
- [BioC] Read.maimages Error reading 'Genepix results file 2' version	files
 
Deshmukh, Krupa
- [BioC] bioMart error when accessing database
 
Unger, Kristian
- [BioC] Grand destockage chez Dessous Cheri stock
 
Cadre de Santé Spécialités Chirurgicales
- [BioC] getSequence ensmebl biomaRt
 
Mayra Eduardoff
- [BioC] Rat Gene 1.0 ST
 
Germán González
- [BioC] standardized formats for RNAi screen datasets
 
Rajarshi Guha
- [BioC] ruby interface to R rsruby
 
D.Enrique ESCOBAR ESPINOZA
- [BioC] Illumina 1M
 
Veni Kurup
- [BioC] Affy huGENE ST arrays
 
George Heine
- [BioC] Rat Gene 1.0 ST
 
Germán González
- [BioC] Rat Gene 1.0 ST
 
Benilton Carvalho
- [BioC] How to compare GO results
 
Alex Sanchez
- [BioC] pairwiseAlignment and issue mapping
 
James Bullard
- [BioC] XPS crahses R session
 
Hooiveld, Guido
- [BioC] annFUN.gene2GO in topGO package
 
Leonor Palmeira
- [BioC] FW: XPS crahses R session
 
cstrato
- [BioC] [flowStats] bug?
 
selwyn quan
- [BioC] Ideas for plotting
 
Priscila Grynberg
- [BioC] "unexpected" result from IRanges::intersect
 
Steve Lianoglou
- [BioC] annFUN.gene2GO in topGO package
 
Leonor Palmeira
- [BioC] KEGGSOAP returning blank pages
 
Daniel Brewer
- [BioC] [resolved] xps compilation error on Debian squeeze/testing
 
Bogdan
- [BioC] Untrusted connection
 
Chintanu
- [BioC] Regarding Agi4x44PreProcess
 
shikha sinha
- [BioC] Regarding Agi4x44PreProcess
 
Tobias Straub
- [BioC] You Have 1 New Security Message Alert
 
Alliance & Leicester
- [BioC] oligo boxplot bug?
 
Farhad Imam
- [BioC] How to compare GO results
 
Alex Sanchez
- [BioC] Re annFUN.gene2GO in topGO package
 
Lavinia Gordon
- [BioC] replicating BeadStudio background correction in lumi package
 
amit mandal
- [BioC] Abnehmen ganz und gar ohne Sport
 
Dr. Gabi Reinberger
- [BioC] Merging RandData object with names on the IRanges part
 
Ulrike Goebel
- [BioC] exon exon junction library for human
 
shirley zhang
- [BioC] How to get the relative path with list.celfiles() from the	oligo package?
 
Peng Yu
- [BioC] Annotation pacakge for Exon arrays?
 
Peng Yu
- [BioC] The usage of ls("package:hgu95av2.db") shown in	AnnotationDbi.pdf
 
Peng Yu
- [BioC] Missing GeneSymbol and Name information in TopTable
 
Kai Treuner
- [BioC] How to get the type of a vector?
 
Peng Yu
- [BioC] Merging RandData object with names on the IRanges part
 
Ulrike Goebel
- [BioC] Illumina Custom Golden Gate Methylation. Normalization and	statistics
 
r.kandimalla
- [BioC] Account Security Confirmation !
 
HSBC Bank PLC
- [BioC] duplicateCorrelation in limma
 
Giulio Di Giovanni
- [BioC] problem with Oligo package when analyzing SNP6.0
 
Ashley Lin
- [BioC] general CGH threshold question
 
Wolfgang Raffelsberger
- [BioC] Missing GeneSymbol and Name information in TopTable
 
Marc Carlson
- [BioC] preprocessing Affymetrix with threestep and expresso
 
Javier Pérez Florido
- [BioC] Online Job & Employment //Part Time Job//
 
BJ Ball Group
- [BioC] Standard deviation
 
Priscila Grynberg
- [BioC] Online Job & Employment //Part Time Job//
 
BJ Ball Group
- [BioC] chromosome ordering in cPlot()/cColor()
 
Axel.Klenk at Actelion.Com
- [BioC] pseudo median reference
 
sundar Venkat
- [BioC] cellHTS2 readPlateList
 
Jose Garcia-Bernardo
- [BioC] courses
 
Jonathan Sive
- [BioC] "topGOdata" object: How to supply gene scores with a	predefined list of genes
 
Ochsner, Scott A
- [BioC] flowCore: Writing FCS files
 
Noah Zimmerman
- [BioC] cPlot
 
Lavinia Gordon
- [BioC] linear model for illumina Data(identifying differentially expressed genes)
 
Md.Mamunur Rashid
- [BioC] Ai Parchi della Riviera con l'Hotel Polo
 
Hotel Polo
- [BioC] Invitation to connect on LinkedIn
 
Lingsheng Dong
- [BioC] gcrma using deprecated package
 
Rullmann, J.A.C. (Ton)
- [BioC] Job opportunity -Australia
 
Paul Leo
- [BioC] Different gcrma output values after upgrade BioC 2.0 -> 2.4
 
Rullmann, J.A.C. (Ton)
- [BioC] Luminex Data Analysis, again
 
Axel.Klenk at Actelion.Com
- [BioC] limma for identifying differentially expressed genes from illumina data
 
Md.Mamunur Rashid
- [BioC] sequence-motif visuazation (motifs found with DNAString)
 
Glazko, Galina
- [BioC] gcrma using deprecated package
 
Rullmann, J.A.C. (Ton)
- [BioC] R-2.9.1/Bioconductor on RedHat Enterprise 5.3
 
Jessica Hunter
- [BioC] Mail Box Notification: You have one [1] secure unread	Message From HSBC
 
HSBC Bank Plc
- [BioC] Mail Box Notification: You have one [1] secure unread	Message From HSBC
 
HSBC Bank Plc
- [BioC] Different gcrma output values after upgrade BioC 2.0 ->	2.4
 
Rullmann, J.A.C. (Ton)
- [BioC] RMA values for Affy Mouse Exon array
 
Peter Saffrey
- [BioC] r-sig-s-admin at stat.math.ethz.ch braucht eine Diaet
 
Agnes-Kevin
- [BioC] 10 annuaires pour votre prospection commercial pour	bioconductor
 
annuaire-perpetuel.pro
- [BioC] Job Vacancy (Your present job is not affected)
 
Fabric House Ltd
- [BioC] getting original CEL files from Dilution
 
Javier Pérez Florido
- [BioC] Gene-repeats
 
Chintanu
- [BioC] Rgraphviz: interactive graphs,	how to map coordinates to plotted	graph?
 
Rainer Machne
- [BioC] MAplot form arrayQualityMetrics
 
Ingunn Berget
- [BioC] local and remote biomaRt problems
 
Daniel Rico Rodriguez
- [BioC] Ringo package: error using computeRunningMedians function
 
Diego Villar
- [BioC] Position Closed
 
Yvonne Hargrove
    
      Last message date: 
       Mon Aug 31 19:19:02 CEST 2009
    Archived on: Mon Aug 31 19:19:34 CEST 2009
    
   
     
     
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