December 2003 Archives by author

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Starting: Mon Dec 1 00:29:09 MEST 2003
Ending: Wed Dec 31 21:59:49 MEST 2003
Messages: 254

• [BioC] ttest or fold change   michael watson (IAH-C)
• [BioC] ttest or fold change   michael watson (IAH-C)
• [BioC] John Innes Centre, UK - Statistician Position   david lowe (JIC)
• [BioC] [BioCBUG] Second user group meeting, 12 Dec 2003 1pm   Vincent Carey 525-2265
• [BioC] Advice on cluster hardware   Anders Sjögren
• [BioC] installation in MacOSX   Edmundo Rodríguez
• [BioC] Data analysis   Naomi Altman
• [BioC] dye swap vs. control channel   Naomi Altman
• [BioC] How to use spiked controls   Naomi Altman
• [BioC] get over it/WAKE uP and SMELL the COFFEE   Naomi Altman
• [BioC] get over it/WAKE uP and SMELL the COFFEE   Naomi Altman
• [BioC] Testing for significant genes with RMA   Naomi Altman
• [BioC] ttest or fold change   Baker, Stephen
• [BioC] ttest or fold change   Baker, Stephen
• [BioC] RE: get over it/WAKE uP and SMELL the COFFEE (Naomi Altman)   Baker, Stephen
• [BioC] ttest or fold change   Stephen P. Baker
• [BioC] R performance questions   Michael Benjamin
• [BioC] RE: Advice on cluster hardware   Michael Benjamin
• [BioC] Bioc/R on openMosix HPC cluster   Michael Benjamin
• [BioC] (no subject)   Michael Benjamin
• [BioC] High-performance Bioconductor experiments   Michael Benjamin
• [BioC] High-performance Bioconductor experiments   Michael Benjamin
• [BioC] affy package problem   Ben Bolstad
• [BioC] gcrma vs. rma   Ben Bolstad
• [BioC] stats on probes instead of summary values?   Ben Bolstad
• [BioC] Cel file error   Ben Bolstad
• [BioC] Annotation package for Drosophila chip   Hinnerk Boriss
• [BioC] multtest on human intervention study   Hinnerk Boriss
• [BioC] 2 way HCL with median centering   Anthony Bosco
• [BioC] Display scale on hclust heatmap   Anthony Bosco
• [BioC] Filter genes on mas5calls   Anthony Bosco
• [BioC] best algorithm Affy low end signal   Anthony Bosco
• [BioC] help with affypdnn   Anthony Bosco
• [BioC] Advice on cluster hardware   Ross Boylan
• [BioC] limma package   Anna Cao
• [BioC] limma package   Anna Cao
• [BioC] SAM in siggenes package   Anna Cao
• [BioC] SAM output in siggenes package   Anna Cao
• [BioC] (no subject)   Bronwyn Carlisle
• [BioC] How to redirect output results   Liping Cheng
• [BioC] Methods to access GeneName to ProbeID in package Affy   Mark Dalphin
• [BioC] Methods to access GeneName to ProbeID in package Affy   Mark Dalphin
• [BioC] GO analysis   Sean Davis
• [BioC] SAM in siggenes package   Sean Davis
• [BioC] MarrayNorm question.   Sean Davis
• [BioC] Bootstrapping   Kevin Dawson
• [BioC] BOOTSTRAP   Kevin Dawson
• [BioC] multtest on human intervention study   Kevin Dawson
• [BioC] Advice on cluster hardware   Ramon Diaz-Uriarte
• [BioC] High-performance Bioconductor experiments   Ramon Diaz-Uriarte
• [BioC] GO analysis   Ramon Diaz-Uriarte
• [BioC] ttest or fold change   Ramon Diaz-Uriarte
• [BioC] ttest or fold change   Ramon Diaz-Uriarte
• [BioC] stats on probes instead of summary values?   Jenny Drnevich
• [BioC] stats on probes instead of summary values?   Jenny Drnevich
• [BioC] webbioc and multtest   Jose Duarte
• [BioC] GO analysis   Jose Duarte
• [BioC] rma causes crash   Rob Dunne
• [BioC] Bioconductor Problem   E Motakis, Mathematics
• [BioC] Arabidopsis Annotation   Julia Engelmann
• [BioC] Re: Bioconductor Digest, Vol 10, Issue 27   Eric
• [BioC] Testing for significant genes with RMA   Eric
• [BioC] Testing for significant genes with RMA   Eric
• [BioC] Venn Diagrams - limma package   John Fieberg
• [BioC] MA plots without bg correction (mArray)   Foata,Francis,LAUSANNE,NRC/N&H
• [BioC] ttest or fold change   Garrett Frampton
• [BioC] ttest or fold change   Garrett Frampton
• [BioC] simple error   Laurent Gautier
• [BioC] labels on hist   Laurent Gautier
• [BioC] extracting maRf from marrayRaw object   Laurent Gautier
• [BioC] Erratum: intensities from a print-tip   Laurent Gautier
• [BioC] question on hgu95 metadata and ontoTools   Robert Gentleman
• [BioC] (no subject)   Robert Gentleman
• [BioC] affy package problem   Jeff Gentry
• [BioC] problem   Jeff Gentry
• [BioC] errors compiling Rgraphviz   Jeff Gentry
• [BioC] errors compiling Rgraphviz   Jeff Gentry
• [BioC] simple error   Jeff Gentry
• [BioC] Potential reposTools bug (was: simple error)   Jeff Gentry
• [BioC] R-package installation from source code   Jeff Gentry
• [BioC] lcex option not working?   Obi Griffith
• [BioC] simple error   Paul Grosu
• [BioC] Cel file error   Paul Grosu
• [BioC] simple error   Paul Grosu
• [BioC] RE: Display scale on hclust heatmap (Warnes, Gregory R)   Ramsi Haddad
• [BioC] Limma parameters   Stephen Henderson
• [BioC] Limma parameters and FDR   Stephen Henderson
• [BioC] ttest or fold change   Stephen Henderson
• [BioC] get over it/WAKE uP and SMELL the COFFEE   Stephen Henderson
• [BioC] labels on hist   Stephen Henderson
• [BioC] Cel file error   Jason Hipp
• [BioC] differential gene expression   Jason Hipp
• [BioC] ttest or fold change   Jason Hipp
• [BioC] limma package   Susan Holmes
• [BioC] Cel file error   Rafael A. Irizarry
• [BioC] How to redirect output results   Rafael A. Irizarry
• [BioC] ttest or fold change   Rafael A. Irizarry
• [BioC] Nobody wants to comment on this? post justRMA hist plots   Rafael A. Irizarry
• [BioC] get over it/WAKE uP and SMELL the COFFEE   Rafael A. Irizarry
• [BioC] ttest or fold change   Nitin Jain
• [BioC] Creating an exprSet from two comma deliminated text files   John E. Cornell, Ph.D.
• [BioC] Creating exprSet from Comma delimited text files SOLVED!!   John E. Cornell, Ph.D.
• [BioC] Help for make a dendrogram (philogenetic tree)   Marcelo Luiz de Laia
• [BioC] Help for make a dendrogram (philogenetic tree)   Marcelo Luiz de Laia
• [BioC] make a dendrogram, cluster   Marcelo Luiz de Laia
• [BioC] affy package problem   Lapointe, David
• [BioC] extracting maRf from marrayRaw object   Mahbub Latif
• [BioC] printTipLoess normalization with missing observations   Mahbub Latif
• [BioC] Annotation Questions   Law, Annie
• [BioC] Annotation Questions   Law, Annie
• [BioC] Annotation data package is not being created   Law, Annie
• [BioC] Annotation data package is not being created   Law, Annie
• [BioC] get over it/WAKE uP and SMELL the COFFEE   Ann Loraine
• [BioC] affy package problem   James MacDonald
• [BioC] affy package problem   James MacDonald
• [BioC] gcrma and memory size - rhdf5 question   James MacDonald
• [BioC] BOOTSTRAP   James MacDonald
• [BioC] Beginner question   James MacDonald
• [BioC] installation in MacOSX   James MacDonald
• [BioC] ttest or fold change   James MacDonald
• [BioC] Memory Problems   James MacDonald
• [BioC] Memory Problems   James MacDonald
• [BioC] SAM in siggenes package   James MacDonald
• [BioC] Cel file error   James MacDonald
• [BioC] SAM output in siggenes package   James MacDonald
• [BioC] R-package installation from source code   James MacDonald
• [BioC] R-package binaries install   James MacDonald
• [BioC] R performance questions   Martin Maechler
• [BioC] lcex option not working?   Martin Maechler
• [BioC] question on hgu95 metadata and ontoTools   Elisabetta Manduchi
• [BioC] question on hgu95 metadata and ontoTools   Elisabetta Manduchi
• [BioC] Reading cDNA data   Tapan Mehta
• [BioC] replicate arrays for limma   Simon Melov
• [BioC] limma and spottypes   Simon Melov
• [BioC] limma and spottypes   Simon Melov
• [BioC] limma and gpr flags?   Simon Melov
• [BioC] Filter genes on mas5calls   Crispin Miller
• [BioC] ttest or fold change   Crispin Miller
• [BioC] ttest or fold change   Crispin Miller
• [BioC] ttest or fold change   Michael Newton
• [BioC] Filter genes on mas5calls   Ron Ophir
• [BioC] Agilent data Normalization   Joel Parker
• [BioC] post justRMA hist plots   Lawrence Paul Petalidis
• [BioC] GO analysis   Lawrence Paul Petalidis
• [BioC] Nobody wants to comment on this? post justRMA hist plots   Lawrence Paul Petalidis
• [BioC] affy package problem   Phguardiol at aol.com
• [BioC] gcrma and memory size - rhdf5 question   Phguardiol at aol.com
• [BioC] affy pack problem   Phguardiol at aol.com
• [BioC] Limma with Imagene - reading control status - NO html   Plantinga, AED
• [BioC] Limma with Imagene - reading control status   Edo Plantinga
• [BioC] Limma: normalizeWithinArrays: Subscript out of bounds   Edo Plantinga
• [BioC] Multiple hypothesis correction and pairwise tests   Adaikalavan RAMASAMY
• [BioC] affy package problem   A.J. Rossini
• [BioC] High-performance Bioconductor experiments   A.J. Rossini
• [BioC] High-performance Bioconductor experiments   A.J. Rossini
• [BioC] ttest or fold change   A.J. Rossini
• [BioC] get over it/WAKE uP and SMELL the COFFEE   A.J. Rossini
• [BioC] Cel file error   A.J. Rossini
• [BioC] Cel file error   A.J. Rossini
• [BioC] Debian packages unavailable temporarily   A.J. Rossini
• [BioC] SAM in siggenes package   Holger Schwender
• [BioC] R on Itanium in 64bit mode? Experiences?   Michael Seewald
• [BioC] errors compiling Rgraphviz   Paul Shannon
• [BioC] GO tool   Chad Shaw
• [BioC] get over it   Chad Shaw
• [BioC] first against the wall   Chad Shaw
• [BioC] rowsing   Chad Shaw
• [BioC] fix   Chad Shaw
• [BioC] Installing Bioconductor on MAC   Simon, Richard (NIH/NCI)
• [BioC] Bioconductor Problem   Ken Simpson
• [BioC] limma and spottypes   Ken Simpson
• [BioC] gcrma vs. rma   Stan Smiley
• [BioC] gcrma vs. rma - my mistake!   Stan Smiley
• [BioC] Re: webbioc and multtest   Colin A. Smith
• [BioC] Limma coerce error   Gordon Smyth
• [BioC] Venn Diagrams - limma package   Gordon Smyth
• [BioC] From Limma to SAM   Gordon Smyth
• [BioC] Limma with Imagene - reading control status - NO html   Gordon Smyth
• [BioC] Data analysis   Gordon Smyth
• [BioC] Limma parameters   Gordon Smyth
• [BioC] Limma parameters and FDR   Gordon Smyth
• [BioC] limma package   Gordon Smyth
• [BioC] Design matrix: dye-swap or channel-swap?   Gordon Smyth
• [BioC] Design Matrix: Dye-swap or channel-swap?   Gordon Smyth
• [BioC] replicate arrays for limma   Gordon Smyth
• [BioC] imagene output   Gordon Smyth
• [BioC] Limma: normalizeWithinArrays: Subscript out of bounds   Gordon Smyth
• [BioC] Read ImaGene output files...   Gordon Smyth
• [BioC] limma and spottypes   Gordon Smyth
• [BioC] limma and spottypes   Gordon Smyth
• [BioC] limma and gpr flags?   Gordon Smyth
• [BioC] Re: limma plot error?   Gordon Smyth
• [BioC] Re: limma plot error?   Gordon Smyth
• [BioC] genelist reading for GenePix data   Gordon Smyth
• [BioC] limma dependency on R 1.8.1 / R 1.9.0   Gordon Smyth
• [BioC] Re: flags?   Gordon Smyth
• [BioC] Help for make a dendrogram (philogenetic tree)   Gordon K Smyth
• [BioC] From Limma to SAM   Gordon K Smyth
• [BioC] cdf package for new Human Genome U133 Plus 2.0 Array ?   Srikanth
• [BioC] problem   Caroline TRUNTZER
• [BioC] Bioconductor Digest, Vol 10, Issue 15 - Email found in subject   Austin Tanney
• [BioC] R-package binaries install   Roger Vallejo
• [BioC] R-package installation from source code   Roger Vallejo
• [BioC] Agenda -- Special Workshop on Alternative Splicing at PSB   Wang, Hui
• [BioC] Display scale on hclust heatmap   Warnes, Gregory R
• [BioC] RE: Display scale on hclust heatmap (Warnes, Gregory R )   Warnes, Gregory R
• [BioC] RE: Display scale on hclust heatmap (Warnes, Gregory R )   Warnes, Gregory R
• [BioC] RE: Display scale on hclust heatmap (Warnes, Gregory R )   Warnes, Gregory R
• [BioC] RE: Display scale on hclust heatmap (Warnes, Gregory R )   Warnes, Gregory R
• [BioC] High-performance Bioconductor experiments   Warnes, Gregory R
• [BioC] Q-value package now available   Warnes, Gregory R
• [BioC] Design matrix: dye-swap or channel-swap?   John Welsh
• [BioC] Design Matrix: Dye-swap or channel-swap?   John Welsh
• [BioC] BioC GUI development   James Wettenhall
• [BioC] gcrma vs. rma   Zhijin Wu
• [BioC] MA plots without bg correction (mArray)   Jean Yee Hwa Yang
• [BioC] Reading cDNA data   Jean Yee Hwa Yang
• [BioC] (no subject)   Joshua (Shuhua) Yuan
• [BioC] Re: Annotate clones Bioconductor beginner   John Zhang
• [BioC] Re: Annotation problem   John Zhang
• [BioC] Annotation package for Drosophila chip   John Zhang
• [BioC] REGARDING ENZYME2AFFY PACKAGE   John Zhang
• [BioC] Annotation Questions   John Zhang
• [BioC] Annotation Questions   John Zhang
• [BioC] Arabidopsis Annotation   John Zhang
• [BioC] Annotation data package is not being created   John Zhang
• [BioC] How to redirect output results   John Zhang
• [BioC] Annotation data package is not being created   John Zhang
• [BioC] win32 version of RdbiPgSQL not available   John Zhang
• [BioC] R performance questions   alessandro.semeria at cramont.it
• [BioC] matchprobes package:Is there a bug?   david neil hayes
• [BioC] Memory Problems   david neil hayes
• [BioC] Memory Problems   david neil hayes
• [BioC] Design matrix: dye-swap or channel-swap   hjlwelsh
• [BioC] How to use spiked controls   zhao luo
• [BioC] Recent changes to Bioconductor packages   madman at jimmy.harvard.edu
• [BioC] Recent changes to Bioconductor packages   madman at jimmy.harvard.edu
• [BioC] Recent changes to Bioconductor packages   madman at jimmy.harvard.edu
• [BioC] Recent changes to Bioconductor packages   madman at jimmy.harvard.edu
• [BioC] Beginner question   marchiem at libero.it
• [BioC] Statistics problems   marchiem at libero.it
• [BioC] imagene output   marchiem at libero.it
• [BioC] Read ImaGene output files...   marchiem at libero.it
• [BioC] win32 version of RdbiPgSQL not available   paul.boutros at utoronto.ca
• [BioC] From Limma to SAM   utepandragon at tiscali.it
• [BioC] REGARDING ENZYME2AFFY PACKAGE   arun kumar vinnakota
• [BioC] How to redirect output results   w.huber at dkfz-heidelberg.de
• [BioC] Methods to access GeneName to ProbeID in package Affy   w.huber at dkfz-heidelberg.de
• [BioC] Methods to access GeneName to ProbeID in package Affy   w.huber at dkfz-heidelberg.de
• [BioC] matchprobes package:Is there a bug?   w.huber at dkfz-heidelberg.de
• [BioC] Bugs in affy::read.affybatch   w.huber at dkfz-heidelberg.de
• [BioC] Bugs in affy::read.affybatch   w.huber at dkfz-heidelberg.de
• [BioC] matchprobes package:Is there a bug?   w.huber at dkfz-heidelberg.de
• [BioC] Multiple hypothesis correction and pairwise tests   yuanji at mdanderson.org

Last message date: Wed Dec 31 21:59:49 MEST 2003
Archived on: Wed Dec 31 21:59:20 MEST 2003

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