[BioC] RE: Display scale on hclust heatmap (Warnes, Gregory R )

[Warnes, Gregory R]

The current version is now available as part of version 0.8.7 of the
gregmisc package on cran.

Note that there it is named 'heatmap.2'.  

-G



> -----Original Message-----
> From: Ramsi Haddad [mailto:rhaddad at genetics.wayne.edu]
> Sent: Thursday, December 04, 2003 1:40 PM
> To: Warnes, Gregory R
> Subject: RE: [BioC] RE: Display scale on hclust heatmap 
> (Warnes, Gregory
> R )
> 
> 
> Dear Greg,
> 
> 	Could you send me the function as a text attachment 
> please?  I was
> trying to change the one you sent to the list so that I could work
> around it.  I commentted out the first bit where the function asks
> if(scale!="none" && key == TRUE).  This allowed the key to be drawn
> without the colors! 
> 
> Thanks for your time.
> 
> Ramsi.
> 
> p.S.  the function is great!
> 
> On Thu, 2003-12-04 at 13:30, Warnes, Gregory R wrote:
> > Yes, this was mentioned by another person, and so I've 
> changed the code so
> > that a color key is present unless explicitly turned off.  
> When scaling is
> > enabled, the key is labeled 'Row Z-Score' or 'Column Z-Score' as
> > appropriate.
> > 
> > -G
> > 
> > > -----Original Message-----
> > > From: Ramsi Haddad [mailto:rhaddad at genetics.wayne.edu]
> > > Sent: Thursday, December 04, 2003 12:00 PM
> > > To: bioconductor at stat.math.ethz.ch
> > > Subject: [BioC] RE: Display scale on hclust heatmap (Warnes, 
> > > Gregory R)
> > > 
> > > 
> > > Dear Greg,
> > > 
> > > 	I was trying out the new heatmap function.  You made 
> > > the following
> > > remark in your email:
> > > 
> > > [If scaling is on, different rows/columns have different scales
> > > so a color key doesn't make any sense.]
> > > 
> > > 	If the scaling is on, it is still good to know how each 
> > > gene differs
> > > from the median.  Therefore, I think it would be very 
> nice to have a
> > > color key.
> > > 
> > > Ramsi
> > > 
> > > _______________________________________________
> > > Bioconductor mailing list
> > > Bioconductor at stat.math.ethz.ch
> > > https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor
> > > 
> > 
> > 
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> 
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