February 2014 Archives by thread

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Starting: Sat Feb 1 03:24:13 CET 2014
Ending: Fri Feb 28 23:50:10 CET 2014
Messages: 682

• [BioC] Problem when trying to use \'affy\' package   Kaj Chokeshaiusaha
• [BioC] crlmm problem   Aaerp
  • [BioC] crlmm problem   Aaerp
    • [BioC] crlmm problem   Matt Ritchie
• [BioC] Problem with this package   Farahdeeba Shaikh
  • [BioC] Problem with this package   James W. MacDonald
• [BioC] summarizeOverlaps colData does NOT contain countBam() summary data   Martin Morgan
• [BioC] minfi release 1.8   Tim Triche, Jr.
  • [BioC] minfi release 1.8   Tim Triche, Jr.
    • [BioC] minfi release 1.8   CT
  • [BioC] minfi release 1.8   Smeeta Shrestha
• [BioC] Best way of presenting a sub-fraction of edgeR RNAseq gene expression results in a publication   Gordon K Smyth
• [BioC] EdgeR GOF plots   Gordon K Smyth
• [BioC] EdgeR: artifacts on BCV plot   Gordon K Smyth
  • [BioC] EdgeR: artifacts on BCV plot   Gordon K Smyth
    • [BioC] EdgeR: artifacts on BCV plot   Ryan
      • [BioC] EdgeR: artifacts on BCV plot   Gordon K Smyth
    • [BioC] EdgeR: artifacts on BCV plot   Adriaan Sticker
      • [BioC] EdgeR: artifacts on BCV plot   Gordon K Smyth
      • [BioC] EdgeR: artifacts on BCV plot   Adriaan Sticker
      • [BioC] EdgeR: artifacts on BCV plot   Gordon K Smyth
      • [BioC] EdgeR: artifacts on BCV plot   Adriaan Sticker
      • [BioC] EdgeR: GoF plot and prior df   Gordon K Smyth
      • [BioC] EdgeR: GoF plot and prior df   Adriaan Sticker
• [BioC] EdgeR LogCpm and LogFC values calculation   Gordon K Smyth
  • [BioC] EdgeR LogCpm and LogFC values calculation   Koen Van den Berge
    • [BioC] EdgeR LogCpm and LogFC values calculation   Gordon K Smyth
• [BioC] edgeR: fold change reported by exactTest for zero values of rna-seq   Gordon K Smyth
• [BioC] prior df estimation of estimateDisp function   Koen Van den Berge
  • [BioC] prior df estimation of estimateDisp function   Gordon K Smyth
    • [BioC] prior df estimation of estimateDisp function   Koen Van den Berge
• [BioC] Identifying genes that contribute to limma's roast/romer gene set enrichments   Gordon K Smyth
• [BioC] Pathview with minor species   Luo Weijun
• [BioC] Updating issues   Kyle Lambert [guest]
  • [BioC] Updating issues   Julian Gehring
    • [BioC] Updating issues   Michael Love
• [BioC] selecting score(GRanges_object) based on coordinates   Philip Lijnzaad
  • [BioC] selecting score(GRanges_object) based on coordinates   Philip Lijnzaad
    • [BioC] selecting score(GRanges_object) based on coordinates   Michael Lawrence
      • [BioC] selecting score(GRanges_object) based on coordinates   Philip Lijnzaad
      • [BioC] selecting score(GRanges_object) based on coordinates   Michael Lawrence
• [BioC] Gviz pacakge   Hahne, Florian
• [BioC] biogrid cytoscape plugin   Helen Smith
  • [BioC] biogrid cytoscape plugin   Dan Tenenbaum
    • [BioC] biogrid cytoscape plugin   Helen Smith
      • [BioC] biogrid cytoscape plugin   Paul Shannon
• [BioC] plotting both   Mark Carty [guest]
  • [BioC] plotting both   Hu, Ying (NIH/NCI) [E]
• [BioC] How to compare GO results in goprofile   Bai, Bing
• [BioC] Ontology   Marc Carlson
  • [BioC] DEXseq error on estimatelog2FoldChanges   Fabrice Tourre
    • [BioC] DEXseq error on estimatelog2FoldChanges   Alejandro Reyes
    • [BioC] DEXseq error on estimatelog2FoldChanges   Fabrice Tourre
    • [BioC] DEXseq error on estimatelog2FoldChanges   Alejandro Reyes
    • [BioC] DEXseq error on estimatelog2FoldChanges   Fabrice Tourre
    • [BioC] DEXseq error on estimatelog2FoldChanges   Fabrice Tourre
• [BioC] DAVIDQuery   Assa Yeroslaviz
  • [BioC] DAVIDQuery   Dan Tenenbaum
    • [BioC] DAVIDQuery   Cristobal Fresno Rodríguez
• [BioC] variantAnnotation: alternative GENETIC_CODE, and circular chromosomes?   Janet Young
  • [BioC] variantAnnotation: alternative GENETIC_CODE, and circular chromosomes?   Hervé Pagès
    • [BioC] variantAnnotation: alternative GENETIC_CODE, and circular chromosomes?   Valerie Obenchain
      • [BioC] variantAnnotation: alternative GENETIC_CODE, and circular chromosomes?   Valerie Obenchain
      • [BioC] variantAnnotation: alternative GENETIC_CODE, and circular chromosomes?   Janet Young
      • [BioC] variantAnnotation: alternative GENETIC_CODE, and circular chromosomes?   Steve Lianoglou
      • [BioC] variantAnnotation: alternative GENETIC_CODE, and circular chromosomes?   Valerie Obenchain
      • [BioC] variantAnnotation: alternative GENETIC_CODE, and circular chromosomes?   Taylor, Sean D
      • [BioC] variantAnnotation: alternative GENETIC_CODE, and circular chromosomes?   Valerie Obenchain
    • [BioC] variantAnnotation: alternative GENETIC_CODE, and circular chromosomes?   Janet Young
• [BioC] Error reading case study BeadStudio profiles with read.ilmn in limma   Tim Kendall
  • [BioC] Error reading case study BeadStudio profiles with read.ilmn in limma   Gordon K Smyth
• [BioC] read.ilmn in limma 3.18.10   Scott Christley
  • [BioC] read.ilmn in limma 3.18.10   Gordon K Smyth
• [BioC] Problem with filtering genes in biomaRt   Pieta Schofield [guest]
  • [BioC] Problem with filtering genes in biomaRt   Thomas Maurel
    • [BioC] Problem with filtering genes in biomaRt   Steffen Durinck
      • [BioC] Problem with filtering genes in biomaRt   Thomas Maurel
    • [BioC] Problem with filtering genes in biomaRt   Steve Lianoglou
  • [BioC] Problem with filtering genes in biomaRt   Thomas Maurel
  • [BioC] Problem with filtering genes in biomaRt   Thomas Maurel
• [BioC] Problems with per package download statistics   heyi xiao
  • [BioC] Problems with per package download statistics   heyi xiao
    • [BioC] Problems with per package download statistics   Dan Tenenbaum
• [BioC] limma-voom   Ming Yi
  • [BioC] limma-voom   Gordon K Smyth
    • [BioC] limma-voom   Steve Lianoglou
      • [BioC] limma-voom   Jeremy Ng
      • [BioC] limma-voom   Tim Triche, Jr.
      • [BioC] limma-voom   Yi, Ming (NIH/NCI) [C]
• [BioC] Seattle Short Course, Feb 27-28: Introduction to Bioconductor for Sequence Analysis   Martin Morgan
• [BioC] limma lmFit returns different results on different computers   Pavel Fedotov [guest]
  • [BioC] limma lmFit returns different results on different computers   Gordon K Smyth
    • [BioC] limma lmFit returns different results on different computers   Kasper Daniel Hansen
• [BioC] Gene Ontology Annotations from Gene Names   Joseph Shaw [guest]
  • [BioC] Gene Ontology Annotations from Gene Names   James W. MacDonald
    • [BioC] Gene Ontology Annotations from Gene Names   Joseph Shaw
      • [BioC] Gene Ontology Annotations from Gene Names   James W. MacDonald
      • [BioC] Gene Ontology Annotations from Gene Names   Joseph Shaw
      • [BioC] Gene Ontology Annotations from Gene Names   James W. MacDonald
      • [BioC] Gene Ontology Annotations from Gene Names   Marc Carlson
      • [BioC] Gene Ontology Annotations from Gene Names   Joseph Shaw
• [BioC] Design/Contrast Matrix for Two Channel Microarray   Joseph Shaw [guest]
  • [BioC] Design/Contrast Matrix for Two Channel Microarray   Gordon K Smyth
    • [BioC] Design/Contrast Matrix for Two Channel Microarray   Joseph Shaw
      • [BioC] Design/Contrast Matrix for Two Channel Microarray   Gordon K Smyth
• [BioC] BSgenomes pig   Miskey, Csaba
  • [BioC] BSgenomes pig   Hervé Pagès
• [BioC] error ReadAffy   n omranian
  • [BioC] error ReadAffy   James W. MacDonald
    • [BioC] error ReadAffy   n omranian
      • [BioC] error ReadAffy   Hooiveld, Guido
      • [BioC] error ReadAffy   n omranian
      • [BioC] error ReadAffy   James W. MacDonald
      • [BioC] error ReadAffy   n omranian
• [BioC] Error messege in edgeR: Error in t(y) + prior.count.scaled : non-conformable arrays   Navonil De Sarkar
  • [BioC] Error messege in edgeR: Error in t(y) + prior.count.scaled : non-conformable arrays   Steve Lianoglou
  • [BioC] Error messege in edgeR: Error in t(y) + prior.count.scaled : non-conformable arrays   Gordon K Smyth
• [BioC] BiSeq - readBismark error   Hans-Ulrich Klein
  • [BioC] BiSeq - readBismark error   David Iles
    • [BioC] BiSeq - readBismark error   Dan Tenenbaum
    • [BioC] BiSeq - readBismark error   Katja Hebestreit
• [BioC] DESeq2 error   Michael Love
  • [BioC] DESeq2 error   Dong, Xianjun
  • [BioC] DESeq2 error   Michael Love
    • [BioC] significant differential genes disappear after including a covariance   Michael Love
• [BioC] IRanges/List oddity: do.call of `c` on a list of IRangesList returns   malcolm cook
  • [BioC] IRanges/List oddity: do.call of `c` on a list of IRangesList returns   Hervé Pagès
• [BioC] Tigre Package question   Solanki, Anisha
  • [BioC] Tigre Package question   Antti Honkela
• [BioC] subsetting SummarizedExperiments - a proposal (or a hack?)   Cook, Malcolm
  • [BioC] subsetting SummarizedExperiments - a proposal (or a hack?)   Steve Lianoglou
    • [BioC] subsetting SummarizedExperiments - a proposal (or a hack?)   Martin Morgan
    • [BioC] subsetting SummarizedExperiments - a proposal (or a hack?)   Martin Morgan
  • [BioC] subsetting SummarizedExperiments - a proposal (or a hack?)   Martin Morgan
    • [BioC] subsetting SummarizedExperiments - a proposal (or a hack?)   Cook, Malcolm
    • [BioC] subsetting SummarizedExperiments - a proposal (or a hack?)   Michael Lawrence
      • [BioC] subsetting SummarizedExperiments - a proposal (or a hack?)   Cook, Malcolm
    • [BioC] subsetting SummarizedExperiments - a proposal (or a hack?)   Cook, Malcolm
      • [BioC] subsetting SummarizedExperiments - a proposal (or a hack?)   Steve Lianoglou
      • [BioC] subsetting SummarizedExperiments - a proposal (or a hack?)   Martin Morgan
• [BioC] in-group missing arrayQualityMetrics()   guest [guest]
  • [BioC] in-group missing arrayQualityMetrics()   Wolfgang Huber
    • [BioC] in-group missing arrayQualityMetrics()   Kasoji, Manjula (NIH/NCI) [C]
      • [BioC] in-group missing arrayQualityMetrics()   Wolfgang Huber
      • [BioC] in-group missing arrayQualityMetrics()   Wolfgang Huber
• [BioC] VariantAnnotation - Accessing specific genomic ranges without needing a tabix file   Fong Chun Chan
  • [BioC] VariantAnnotation - Accessing specific genomic ranges without needing a tabix file   Michael Lawrence
    • [BioC] VariantAnnotation - Accessing specific genomic ranges without needing a tabix file   Fong Chun Chan
• [BioC] Bioconductor Digest, Vol 132, Issue 5   Gordon K Smyth
  • [BioC] prior df estimation of estimateDisp function   Gordon K Smyth
• [BioC] VariantAnnotation R Package - Merging Two VCF files   Fong Chun Chan
  • [BioC] VariantAnnotation R Package - Merging Two VCF files   Michael Lawrence
• [BioC] questions on edgeR package   Gordon K Smyth
  • [BioC] questions on edgeR package   Yi, Ming (NIH/NCI) [C]
    • [BioC] questions on edgeR package   Gordon K Smyth
      • [BioC] questions on edgeR package   Ming Yi
• [BioC] liimma and Across Array Normalisation   Saket Choudhary
  • [BioC] liimma and Across Array Normalisation   Gordon K Smyth
    • [BioC] liimma and Across Array Normalisation   Saket Choudhary
      • [BioC] liimma and Across Array Normalisation   Saket Choudhary
      • [BioC] liimma and Across Array Normalisation   Gordon K Smyth
      • [BioC] liimma and Across Array Normalisation   Saket Choudhary
      • [BioC] liimma and Across Array Normalisation   Saket Choudhary
      • [BioC] liimma and Across Array Normalisation   James W. MacDonald
      • [BioC] liimma and Across Array Normalisation   Saket Choudhary
      • [BioC] liimma and Across Array Normalisation   Gordon K Smyth
      • [BioC] liimma and Across Array Normalisation   Saket Choudhary
      • [BioC] liimma and Across Array Normalisation   Gordon K Smyth
      • [BioC] liimma and Across Array Normalisation   Saket Choudhary
      • [BioC] liimma and Across Array Normalisation   Gordon K Smyth
      • [BioC] liimma and Across Array Normalisation   Gordon K Smyth
      • [BioC] liimma and Across Array Normalisation   Saket Choudhary
      • [BioC] liimma and Across Array Normalisation   Steve Lianoglou
• [BioC] Defining the model matrix for a multi-factorial design with interactions - edgeR   Marco Pegoraro
  • [BioC] Defining the model matrix for a multi-factorial design with interactions - edgeR   Ryan
• [BioC] Normalization of RNAseq data using ERCC?   Agnes Paquet
  • [BioC] Normalization of RNAseq data using ERCC?   Davis, Wade
• [BioC] DEXSeq - too many exons in gene   António domingues
  • [BioC] DEXSeq - too many exons in gene   Steve Lianoglou
    • [BioC] DEXSeq - too many exons in gene   António domingues
      • [BioC] DEXSeq - too many exons in gene   Devon Ryan
      • [BioC] DEXSeq - too many exons in gene   Antonio Domingues
      • [BioC] DEXSeq - too many exons in gene   Alejandro Reyes
      • [BioC] DEXSeq - too many exons in gene   António domingues
      • [BioC] DEXSeq - too many exons in gene   Steve Lianoglou
  • [BioC] DEXSeq - too many exons in gene   Steve Lianoglou
• [BioC] problem with waveTiling package   Yanwu Guo
• [BioC] edgeR: prior.n question   Jason Miller
• [BioC] edgeR and prior.n   Jason Miller
• [BioC] What RNA-Seq expression estimates to use for plotting to show voom/limma Differential expression   Heather Estrella
  • [BioC] What RNA-Seq expression estimates to use for plotting to show voom/limma Differential expression   Gordon K Smyth
  • [BioC] What RNA-Seq expression estimates to use for plotting to show voom/limma Differential expression   Gordon K Smyth
• [BioC] edgeR: adjusting prior.n   J [guest]
  • [BioC] edgeR: adjusting prior.n   Gordon K Smyth
    • [BioC] Problem in limma-voom   Ming Yi
      • [BioC] Problem in limma-voom   Gordon K Smyth
      • [BioC] Problem in limma-voom   Ming Yi
      • [BioC] Problem in limma-voom   Steve Lianoglou
      • [BioC] Problem in limma-voom   Ming Yi
      • [BioC] Problem in limma-voom   Ming Yi
      • [BioC] Problem in limma-voom   Yunshun Chen
      • [BioC] Problem in limma-voom   Ming Yi
      • [BioC] Problem in limma-voom   Ming Yi
      • [BioC] Problem in limma-voom   Ming Yi
      • [BioC] Problem in limma-voom   Yunshun Chen
      • [BioC] Problem in limma-voom   Ming Yi
• [BioC] Normalization of Illumina Array with separate bgx-file   Stefanie Busch
  • [BioC] Normalization of Illumina Array with separate bgx-file   Gordon K Smyth
• [BioC] edgeR, multifactorial design   Mike Miller
  • [BioC] edgeR, multifactorial design   Gordon K Smyth
• [BioC] EdgeR multi-factor testing questions   Yanzhu [guest]
  • [BioC] EdgeR multi-factor testing questions   Gordon K Smyth
• [BioC] Rcade analysis without ChIP-seq replicates   André Faure
  • [BioC] Rcade analysis without ChIP-seq replicates   Jonathan Cairns
    • [BioC] Rcade analysis without ChIP-seq replicates   André Faure
      • [BioC] Rcade analysis without ChIP-seq replicates   Jonathan Cairns
      • [BioC] Rcade analysis without ChIP-seq replicates   André Faure
• [BioC] error in calculate integer copy numbers. bug?   Johnbosco [guest]
  • [BioC] error in calculate integer copy numbers. bug?   Günter Klambauer
• [BioC] Why nbinomGLMTest in DESeq reports zero p values   Yanzhu [guest]
  • [BioC] Why nbinomGLMTest in DESeq reports zero p values   Wolfgang Huber
• [BioC] edgeR - zero values   Laura Eierman
  • [BioC] edgeR - zero values   James W. MacDonald
• [BioC] How to get gene symbol after deseq?   Fabrice Tourre
  • [BioC] How to get gene symbol after deseq?   James W. MacDonald
    • [BioC] How to get gene symbol after deseq?   Fabrice Tourre
      • [BioC] How to get gene symbol after deseq?   James W. MacDonald
      • [BioC] How to get gene symbol after deseq?   Fabrice Tourre
      • [BioC] How to get gene symbol after deseq?   Steve Lianoglou
      • [BioC] How to get gene symbol after deseq?   Fabrice Tourre
• [BioC] cluster or pattern analysis of expression and CN data of cell lines   Chen Runtian
  • [BioC] cluster or pattern analysis of expression and CN data of cell lines   Tim Triche, Jr.
    • [BioC] cluster or pattern analysis of expression and CN data of cell lines   Chen Runtian
• [BioC] referencecn.mops: limit on number of tumor-normal pairs?   Johnbosco [guest]
  • [BioC] cn.mops   Günter Klambauer
• [BioC] Coercion lumi/minfi objects   Aileen Bahl
  • [BioC] Coercion lumi/minfi objects   Tim Triche, Jr.
    • [BioC] Coercion lumi/minfi objects   Marco Boks
    • [BioC] Coercion lumi/minfi objects   Tim Triche, Jr.
      • [BioC] Coercion lumi/minfi objects   Marco Boks
      • [BioC] Coercion lumi/minfi objects   Marco Boks
• [BioC] referencecn.mops: workaround   Günter Klambauer
• [BioC] Draft support for HTA 2.0 with oligo   Benilton Carvalho
  • [BioC] Draft support for HTA 2.0 with oligo   Mark Cowley
  • [BioC] Draft support for HTA 2.0 with oligo   Johann Pellet
    • [BioC] Draft support for HTA 2.0 with oligo   Benilton Carvalho
    • [BioC] Draft support for HTA 2.0 with oligo   James W. MacDonald
• [BioC] edgeR glmLRT pearson residual   Laura Eierman
  • [BioC] edgeR glmLRT pearson residual   Gordon K Smyth
• [BioC] FW: Tigre Package question 2   Solanki, Anisha
• [BioC] DESeq2 high fold change values for comparison of samples with zero counts   Noa Henig
  • [BioC] DESeq2 high fold change values for comparison of samples with zero counts   Michael Love
    • [BioC] DESeq2 high fold change values for comparison of samples with zero counts   Michael Love
      • [BioC] DESeq2 high fold change values for comparison of samples with zero counts   Noa Henig
      • [BioC] DESeq2 high fold change values for comparison of samples with zero counts   Michael Love
• [BioC] Tigre Package question 2   Solanki, Anisha
  • [BioC] Tigre Package question 2   Antti Honkela
• [BioC] limma differences with and without an intercept   Rory Kirchner [guest]
  • [BioC] limma differences with and without an intercept   Gordon K Smyth
• [BioC] maSigPro help- p. vector error   Audra [guest]
• [BioC] Join us at Biocuration 2014 Conference   Robin Haw
  • [BioC] Biocuration 2014 Abstract Deadline Extended by 24 Hours   Robin Haw
• [BioC] AgiMicroRna -1 filtered values   Coonen Maarten (TGX)
  • [BioC] AgiMicroRna -1 filtered values   Coonen Maarten (TGX)
    • [BioC] AgiMicroRna -1 filtered values   Steve Lianoglou
      • [BioC] AgiMicroRna -1 filtered values   Coonen Maarten (TGX)
      • [BioC] AgiMicroRna -1 filtered values   Steve Lianoglou
• [BioC] ReportingTools and gene annotation   Ugo Borello
  • [BioC] ReportingTools and gene annotation   James W. MacDonald
    • [BioC] ReportingTools and gene annotation   Michael Lawrence
      • [BioC] ReportingTools and gene annotation   Ugo Borello
• [BioC] Problem with exporting graph from plotPCA() in a DESeq2 function   Fabrice Chatonnet [guest]
  • [BioC] Problem with exporting graph from plotPCA() in a DESeq2 function   Michael Love
    • [BioC] Problem with exporting graph from plotPCA() in a DESeq2 function   Ugo Borello
      • [BioC] Problem with exporting graph from plotPCA() in a DESeq2 function   Wolfgang Huber
      • [BioC] Problem with exporting graph from plotPCA() in a DESeq2 function   Ugo Borello
    • [BioC] Problem with exporting graph from plotPCA() in a DESeq2 function   Fabrice Chatonnet
• [BioC] error in DEXSeq fitDispersionFunction()   Odhams, Christopher
  • [BioC] error in DEXSeq fitDispersionFunction()   Odhams, Christopher
  • [BioC] error in DEXSeq fitDispersionFunction()   Wolfgang Huber
    • [BioC] error in DEXSeq fitDispersionFunction()   Wolfgang Huber
• [BioC] mzR installation   gtsiliki at bioacademy.gr
  • [BioC] mzR installation   Dan Tenenbaum
    • [BioC] mzR installation   Dirk Eddelbuettel
  • [BioC] mzR installation   Dan Tenenbaum
    • [BioC] mzR installation   Dan Tenenbaum
      • [BioC] mzR installation   Dan Tenenbaum
      • [BioC] mzR installation   gtsiliki at bioacademy.gr
• [BioC] readGAlignmentPairsFromBam and readGAlignmentFromBam differences   Emmanouela Repapi [guest]
  • [BioC] [devteam-bioc] readGAlignmentPairsFromBam and readGAlignmentFromBam differences   Valerie Obenchain
  • [BioC] [devteam-bioc] readGAlignmentPairsFromBam and readGAlignmentFromBam differences   Hervé Pagès
    • [BioC] [devteam-bioc] readGAlignmentPairsFromBam and readGAlignmentFromBam differences   Emmanouela Repapi
• [BioC] DESeq2 - input data questions   Ming Yi
  • [BioC] DESeq2 - input data questions   Michael Love
    • [BioC] DESeq2 - input data questions   Ming Yi
      • [BioC] DESeq2 - input data questions   Steve Lianoglou
      • [BioC] DESeq2 - input data questions   Michael Love
      • [BioC] DESeq2 - input data questions   Ming Yi
      • [BioC] DESeq2 - input data questions   Michael Love
• [BioC] Failure to Install Organism Package from AnnotationForge   Joseph Shaw [guest]
• [BioC] zero values and lib.size   J [guest]
  • [BioC] zero values and lib.size   James W. MacDonald
• [BioC] active subnetwork determination   Sidders, Benjamin
  • [BioC] active subnetwork determination   Paul Shannon
• [BioC] removing some mcols from tallyVariants output   Michael Lawrence
• [BioC] mzR install requires deprecated header file   Rob [guest]
  • [BioC] mzR install requires deprecated header file   James W. MacDonald
    • [BioC] mzR install requires deprecated header file   Rob Smith
    • [BioC] mzR install requires deprecated header file   Dan Tenenbaum
• [BioC] EdgeR norm.factor input   Yanzhu [guest]
  • [BioC] EdgeR norm.factor input   Gordon K Smyth
• [BioC] Identifying Processes as Upregulated or Downregulated   Joseph Shaw
  • [BioC] Identifying Processes as Upregulated or Downregulated   James W. MacDonald
    • [BioC] Identifying Processes as Upregulated or Downregulated   Joseph Shaw
      • [BioC] Identifying Processes as Upregulated or Downregulated   James W. MacDonald
      • [BioC] Identifying Processes as Upregulated or Downregulated   Joseph Shaw
• [BioC] Update in the gage RNA-seq pathway analysis joint workflow   Luo Weijun
• [BioC] FW: Tigre Package question 3   Solanki, Anisha
• [BioC] Tigre Package question 3   Antti Honkela
  • [BioC] Tigre Package question 3   Solanki, Anisha
    • [BioC] Tigre Package question 3   Antti Honkela
• [BioC] DESeq for differentiating highly expressed genes   Liang, Chun
  • [BioC] DESeq for differentiating highly expressed genes   Steve Lianoglou
• [BioC] EdgeR norm.factors input   Yanzhu [guest]
  • [BioC] CNTools error: *** caught segfault ***address (nil), cause 'unknown'   ying chen
  • [BioC] EdgeR norm.factors input   Gordon K Smyth
• [BioC] RMA on Exon Array NaN values   Nicolas Servant
  • [BioC] RMA on Exon Array NaN values   Benilton Carvalho
    • [BioC] RMA on Exon Array NaN values   Nicolas Servant
    • [BioC] RMA on Exon Array NaN values   Benilton Carvalho
• [BioC] DiffBind loading Problem   Rory Stark
  • [BioC] DiffBind loading Problem   Rory Stark
• [BioC] Can we use Intraclass correlation (ICC) to optimize clustering parameters?   Rafi [guest]
  • [BioC] Can we use Intraclass correlation (ICC) to optimize clustering parameters?   Tim Triche, Jr.
    • [BioC] Can we use Intraclass correlation (ICC) to optimize clustering parameters?   Peter Langfelder
• [BioC] Filtering Post-Normalization With limma   Matt Jones [guest]
• [BioC] How limma Deals With Correlation Across Replicates   Matt Jones [guest]
  • [BioC] How limma Deals With Correlation Across Replicates   Gordon K Smyth
    • [BioC] How limma Deals With Correlation Across Replicates   Matt Jones
      • [BioC] How limma Deals With Correlation Across Replicates   Gordon K Smyth
• [BioC] error with pd.ragene1.0.st.v1 and oligo   Ian [guest]
  • [BioC] error with pd.ragene1.0.st.v1 and oligo   Ian B Stanaway
    • [BioC] error with pd.ragene1.0.st.v1 and oligo   Benilton Carvalho
      • [BioC] error with pd.ragene1.0.st.v1 and oligo   Ian B Stanaway
      • [BioC] error with pd.ragene1.0.st.v1 and oligo   Ian B Stanaway
      • [BioC] error with pd.ragene1.0.st.v1 and oligo   Benilton Carvalho
      • [BioC] error with pd.ragene1.0.st.v1 and oligo   Benilton Carvalho
• [BioC] Paired Data Analysis in baySeq package   zhao shilin
  • [BioC] Fwd: Paired Data Analysis in baySeq package   Tom Hardcastle
    • [BioC] Fwd: Paired Data Analysis in baySeq package   zhao shilin
      • [BioC] Fwd: Paired Data Analysis in baySeq package   Tom Hardcastle
• [BioC] GO-Pathways using RDAVIDWebService   Fazulur Rehaman
  • [BioC] GO-Pathways using RDAVIDWebService   Cristobal Fresno Rodríguez
    • [BioC] GO-Pathways using RDAVIDWebService   Fazulur Rehaman
• [BioC] DiffBind error loading dba   Rory Stark
• [BioC] DESeq2 test over all timepoints?   Hickman, R.J. (Richard)
  • [BioC] DESeq2 test over all timepoints?   Michael Love
    • [BioC] DESeq2 test over all timepoints?   Hickman, R.J. (Richard)
• [BioC] How to normalize to input with polysome fractionation samples before running edgeR   Scott Daniel
• [BioC] filtering probes in affymetrix data   Sabet, Julia A
  • [BioC] filtering probes in affymetrix data   James W. MacDonald
    • [BioC] filtering probes in affymetrix data   Sabet, Julia A
      • [BioC] filtering probes in affymetrix data   James W. MacDonald
      • [BioC] filtering probes in affymetrix data   Sabet, Julia A
      • [BioC] filtering probes in affymetrix data   Sean Davis
      • [BioC] filtering probes in affymetrix data   James W. MacDonald
      • [BioC] filtering probes in affymetrix data   Sabet, Julia A
      • [BioC] filtering probes in affymetrix data   James W. MacDonald
      • [BioC] filtering probes in affymetrix data   Sabet, Julia A
      • [BioC] filtering probes in affymetrix data   James W. MacDonald
      • [BioC] filtering probes in affymetrix data   Sabet, Julia A
      • [BioC] filtering probes in affymetrix data   Sabet, Julia A
      • [BioC] filtering probes in affymetrix data   James W. MacDonald
      • [BioC] filtering probes in affymetrix data   Sabet, Julia A
      • [BioC] filtering probes in affymetrix data   James W. MacDonald
      • [BioC] filtering probes in affymetrix data   Sabet, Julia A
      • [BioC] filtering probes in affymetrix data   James W. MacDonald
• [BioC] similar package   n omranian
• [BioC] reodering a GRanges object by its metadata   d r
  • [BioC] reodering a GRanges object by its metadata   Martin Morgan
    • [BioC] reodering a GRanges object by its metadata   Michael Lawrence
• [BioC] getGEO and further analyzing of data by bioconductor   Jerry Cholo
  • [BioC] getGEO and further analyzing of data by bioconductor   Tim Triche, Jr.
  • [BioC] getGEO and further analyzing of data by bioconductor   Sean Davis
• [BioC] getGEO and then analyzing the data   Jerry Cholo
  • [BioC] getGEO and then analyzing the data   Sean Davis
• [BioC] questions related to DiffBind package   Rory Stark
• [BioC] Please add me to the Dropbox containing the vignette data   Rory Stark
  • [BioC] Please add me to the Dropbox containing the vignette data   Blum, Roy
    • [BioC] DiffBind (Please add me to the Dropbox containing the vignette data)   Rory Stark
      • [BioC] DiffBind (Please add me to the Dropbox containing the vignette data)   Blum, Roy
• [BioC] GEOquery error when retrieving raw files   Ying Chen
  • [BioC] GEOquery error when retrieving raw files   Sean Davis
• [BioC] goseq: pwf: Error in if (hi <= low) { : missing value where TRUE/FALSE needed   刘鹏飞
• [BioC] Different probesets but same expression values?   David
  • [BioC] Different probesets but same expression values?   James W. MacDonald
• [BioC] bypassing firewall - destination ip address   Kishor Tappita
  • [BioC] bypassing firewall - destination ip address   Dan Tenenbaum
    • [BioC] bypassing firewall - destination ip address   Kishor Tappita
    • [BioC] bypassing firewall - destination ip address   Kishor Tappita
• [BioC] Student Internships at Illumina Cambridge Ltd, UK   Adrian Alexa
• [BioC] WGCNA   Jerry Cholo
  • [BioC] WGCNA   Tim Triche, Jr.
  • [BioC] WGCNA   Tim Triche, Jr.
    • [BioC] WGCNA   Peter Langfelder
  • [BioC] WGCNA   Peter Langfelder
    • [BioC] WGCNA   Martin Morgan
      • [BioC] WGCNA   Peter Langfelder
      • [BioC] WGCNA   Martin Morgan
      • [BioC] WGCNA   Peter Langfelder
• [BioC] Error in x[["Version"]] : subscript out of bounds   Jerry Cholo
• [BioC] Memory problem with rma()   Damian Plichta [guest]
  • [BioC] Memory problem with rma()   Sean Davis
    • [BioC] Memory problem with rma()   plichta at cbs.dtu.dk
      • [BioC] Memory problem with rma()   Benilton Carvalho
      • [BioC] Memory problem with rma()   plichta at cbs.dtu.dk
      • [BioC] Memory problem with rma()   Benilton Carvalho
  • [BioC] Memory problem with rma()   cstrato
  • [BioC] Memory problem with rma()   Steve Piccolo
• [BioC] minOverlap in DiffBind in R- what does it mean?   Rory Stark
• [BioC] limma for time course dataset   Joseph J Hou
  • [BioC] limma for time course dataset 2   Joseph J Hou
    • [BioC] limma for time course dataset 2   Yunshun Chen
      • [BioC] limma for time course dataset 2   houjue at cmpt.ac.cn
    • [BioC] limma for time course dataset 2   Yunshun Chen
      • [BioC] limma for time course dataset 2   houjue at cmpt.ac.cn
    • [BioC] limma for time course dataset 2   Yunshun Chen
• [BioC] How does pathview deal with enzyme with several coding genes?   刘鹏飞
  • [BioC] How does pathview deal with enzyme with several coding genes?   刘鹏飞
    • [BioC] How does pathview deal with enzyme with several coding genes?   Luo Weijun
      • [BioC] How does pathview deal with enzyme with several coding genes?   刘鹏飞
      • [BioC] How does pathview deal with enzyme with several coding genes?   Luo Weijun
      • [BioC] How does pathview deal with enzyme with several coding genes?   Luo Weijun
• [BioC] Gviz problem to extract some track with UcscTrack like Broad ChromHMM   Hahne, Florian
  • [BioC] Gviz problem to extract some track with UcscTrack like Broad ChromHMM   Hahne, Florian
    • [BioC] Gviz problem to extract some track with UcscTrack like Broad ChromHMM   Michael Lawrence
      • [BioC] Gviz problem to extract some track with UcscTrack like Broad ChromHMM   Hahne, Florian
      • [BioC] Question about BiomartGeneRegionTrack   Tiphaine Martin
      • [BioC] Question about BiomartGeneRegionTrack   Hahne, Florian
• [BioC] Problems with using Pearson correlation in hcluster / hclust2treeview   Eric Liaw [guest]
• [BioC] How to add labels to dots in the datatrack in Gviz?   sh. chunxuan
• [BioC] Minfi "mapToGenome" error when attempting to generate a genomicRatioSet   Kasper Daniel Hansen
  • [BioC] Minfi "mapToGenome" error when attempting to generate a genomicRatioSet   Dale Watkins
    • [BioC] Minfi "mapToGenome" error when attempting to generate a genomicRatioSet   Kasper Daniel Hansen
• [BioC] crlmm : copy number and genotyping of Illumina data   Abhishek Pratap
  • [BioC] crlmm : copy number and genotyping of Illumina data   Matt Ritchie
• [BioC] how to determine what kind of dispersion to use   J [guest]
  • [BioC] how to determine what kind of dispersion to use   Ryan
• [BioC] platform design info for primeview arrays for oligo package   Anthony Bosco
  • [BioC] platform design info for primeview arrays for oligo package   James W. MacDonald
    • [BioC] platform design info for primeview arrays for oligo package   Anthony Bosco
• [BioC] Non-specific filtering of Affymetrix Microarray data   Vinay Randhawa [guest]
  • [BioC] Non-specific filtering of Affymetrix Microarray data   Wolfgang Huber
• [BioC] Limma design : What is the "best" method to infer biological replicates during differentially expression analysis   Santy Marques-Ladeira
  • [BioC] Limma design : What is the "best" method to infer biological replicates during differentially expression analysis   Gordon K Smyth
    • [BioC] Limma design : What is the   Santy Marques-Ladeira
  • [BioC] Limma design : What is the "best" method to infer biological replicates during differentially expression analysis   Gordon K Smyth
• [BioC] Packages not in BioC or CRAN   Samuel Younkin
  • [BioC] Packages not in BioC or CRAN   Martin Morgan
• [BioC] limma - special case of contrasting   Mitja Mitrovic
• [BioC] fRMA- more issues with custom CDFs   Cornwell, Adam
  • [BioC] fRMA- more issues with custom CDFs   Matthew McCall
• [BioC] edgeR: regarding Poisson distribution and goodness of fit graph   J [guest]
• [BioC] DESeq2   Shobana Sekar [guest]
  • [BioC] DESeq2   Michael Love
    • [BioC] DESeq2   SSekar at tgen.org
      • [BioC] DESeq2   Michael Love
      • [BioC] DESeq2   Michael Love
      • [BioC] DESeq2   SSekar at tgen.org
• [BioC] ComBat: 2 adjustment variables & continuous adjustment variables   Magda Price
  • [BioC] ComBat: 2 adjustment variables & continuous adjustment variables   Johnson, William Evan
• [BioC] Gviz output extra empty page on pdf device   Dan Du
  • [BioC] Gviz output extra empty page on pdf device   Hahne, Florian
    • [BioC] Gviz output extra empty page on pdf device   Dan Du
      • [BioC] Gviz output extra empty page on pdf device   Hahne, Florian
• [BioC] flowcore/flowviz filter   Nacho [guest]
  • [BioC] flowcore/flowviz filter   Mike
• [BioC] DESeq2 preprint   Michael Love
• [BioC] AnnotatedDataFrame metadata bug?   Adrienne Stilp
  • [BioC] AnnotatedDataFrame metadata bug?   Martin Morgan
• [BioC] using rma() on XYS files using oligo package   James Yousin
  • [BioC] using rma() on XYS files using oligo package   Benilton Carvalho
    • [BioC] using rma() on XYS files using oligo package   James Yousin
      • [BioC] using rma() on XYS files using oligo package   Benilton Carvalho
      • [BioC] using rma() on XYS files using oligo package   Benilton Carvalho
      • [BioC] using rma() on XYS files using oligo package   James Yousin
      • [BioC] using rma() on XYS files using oligo package   Benilton Carvalho
• [BioC] edgeR: regarding Poisson distribution and goodness of   Yunshun Chen
• [BioC] FlowViz and FlowStats Interaction in Gates on densityplots   Aric Gregson
• [BioC] reordering the x-axis   Assa Yeroslaviz
• [BioC] dexseq_count.py SAM "NH" taq   Jose Garcia
  • [BioC] dexseq_count.py SAM "NH" taq   Jose Manuel Garcia Manteiga
  • [BioC] dexseq_count.py SAM "NH" taq   Alejandro Reyes
    • [BioC] dexseq_count.py SAM "NH" taq   Jose Garcia
• [BioC] Questions about GOseq after DESeq2   amandine.fournier at chu-lyon.fr
  • [BioC] Questions about GOseq after DESeq2   Bernd Klaus
  • [BioC] Questions about GOseq after DESeq2   Bernd Klaus
  • [BioC] Questions about GOseq after DESeq2   Michael Love
• [BioC] limma design matrix missing a Date column   Sabet, Julia A
  • [BioC] limma design matrix missing a Date column   James W. MacDonald
• [BioC] trouble in loading heatmap.2   Wei Xu
  • [BioC] trouble in loading heatmap.2   James W. MacDonald
    • [BioC] trouble in loading heatmap.2   Wei Xu
• [BioC] no significant differences in gene expression-limma   Sabet, Julia A
  • [BioC] no significant differences in gene expression-limma   Gordon K Smyth
    • [BioC] no significant differences in gene expression-limma   Sabet, Julia A
      • [BioC] no significant differences in gene expression-limma   Steve Lianoglou
  • [BioC] no significant differences in gene expression-limma   Gordon K Smyth
    • [BioC] no significant differences in gene expression-limma   Sabet, Julia A
      • [BioC] no significant differences in gene expression-limma   Gordon K Smyth
      • [BioC] no significant differences in gene expression-limma   Sabet, Julia A
      • [BioC] no significant differences in gene expression-limma   Gordon K Smyth
• [BioC] Bug in GSVA with methods other than default?   Jonathan Manning
  • [BioC] Bug in GSVA with methods other than default?   Jonathan Manning
    • [BioC] Bug in GSVA with methods other than default?   Sonja Haenzelmann
      • [BioC] Bug in GSVA with methods other than default?   Jonathan Manning
      • [BioC] Bug in GSVA with methods other than default?   Sonja Haenzelmann
      • [BioC] Bug in GSVA with methods other than default?   Jonathan Manning
      • [BioC] Bug in GSVA with methods other than default?   Robert Castelo
      • [BioC] Bug in GSVA with methods other than default?   Jonathan Manning
      • [BioC] Bug in GSVA with methods other than default?   Robert Castelo
• [BioC] Can't install Rgraphviz   Enrico Ferrero
  • [BioC] Can't install Rgraphviz   Kasper Daniel Hansen
    • [BioC] Can't install Rgraphviz   Enrico Ferrero
      • [BioC] Can't install Rgraphviz   Enrico Ferrero
      • [BioC] Can't install Rgraphviz   Kasper Daniel Hansen
      • [BioC] Can't install Rgraphviz   Enrico Ferrero
      • [BioC] Can't install Rgraphviz   Kasper Daniel Hansen
      • [BioC] Can't install Rgraphviz   Enrico Ferrero
      • [BioC] Can't install Rgraphviz   Kasper Daniel Hansen
      • [BioC] Can't install Rgraphviz   Kasper Daniel Hansen
      • [BioC] Can't install Rgraphviz   Enrico Ferrero
      • [BioC] Can't install Rgraphviz   Kasper Daniel Hansen
      • [BioC] Can't install Rgraphviz   Enrico Ferrero
• [BioC] bumphunter DMRs difficulties   Giovanni Calice
  • [BioC] bumphunter DMRs difficulties   Kasper Daniel Hansen
    • [BioC] bumphunter DMRs difficulties   Giovanni Calice
      • [BioC] bumphunter DMRs difficulties   James W. MacDonald
      • [BioC] bumphunter DMRs difficulties   Giovanni Calice
      • [BioC] bumphunter DMRs difficulties   James W. MacDonald
      • [BioC] bumphunter DMRs difficulties   Giovanni Calice
      • [BioC] bumphunter DMRs difficulties   Giovanni Calice
      • [BioC] bumphunter DMRs difficulties   Tim Triche, Jr.
      • [BioC] bumphunter DMRs difficulties   Giovanni Calice
      • [BioC] bumphunter DMRs difficulties   James W. MacDonald
      • [BioC] bumphunter DMRs difficulties   Kasper Daniel Hansen
      • [BioC] bumphunter DMRs difficulties   Giovanni Calice
• [BioC] Tigre Question   Antti Honkela
  • [BioC] Tigre Question   Solanki, Anisha
• [BioC] DESeq2 - regularised log transformation blind or not?   Mike Stubbington
  • [BioC] DESeq2 - regularised log transformation blind or not?   Wolfgang Huber
    • [BioC] DESeq2 - regularised log transformation blind or not?   Mike Stubbington
      • [BioC] DESeq2 - regularised log transformation blind or not?   Wolfgang Huber
      • [BioC] DESeq2 - regularised log transformation blind or not?   Mike Stubbington
      • [BioC] DESeq2 - regularised log transformation blind or not?   Michael Love
    • [BioC] DESeq2 - regularised log transformation blind or not?   Michael Love
      • [BioC] DESeq2 - regularised log transformation blind or not?   Wolfgang Huber
• [BioC] Gviz: axes related parameters   Maxim
  • [BioC] what should be the cutoff for detecting over expressing tumor samples when compared with normal samples?   ying chen
  • [BioC] Gviz: axes related parameters   Steve Lianoglou
    • [BioC] Gviz: axes related parameters   Maxim
      • [BioC] Gviz: axes related parameters   Dan Du
      • [BioC] Gviz: axes related parameters   Maxim
      • [BioC] Gviz: axes related parameters   James W. MacDonald
• [BioC] rtracklayer\'s browseGenome function failes when invoked according to vignette   Marcel Schilling [guest]
  • [BioC] rtracklayer\'s browseGenome function failes when invoked according to vignette   Michael Lawrence
• [BioC] fastest way to keep score when reduce Granges data   Ou, Jianhong
  • [BioC] fastest way to keep score when reduce Granges data   Hervé Pagès
    • [BioC] fastest way to keep score when reduce Granges data   Ou, Jianhong
      • [BioC] fastest way to keep score when reduce Granges data   Hervé Pagès
      • [BioC] fastest way to keep score when reduce Granges data   Ou, Jianhong
• [BioC] OMIM - biomaRt?   Tim Smith
• [BioC] Candida albicans AnnotationData Package   Baharul [guest]
  • [BioC] Candida albicans AnnotationData Package   James W. MacDonald
• [BioC] DMR identification: minfi speed, memory problems   Allegra Petti [guest]
  • [BioC] DMR identification: minfi speed, memory problems   James W. MacDonald
    • [BioC] DMR identification: minfi speed, memory problems   Allegra A. Petti
      • [BioC] DMR identification: minfi speed, memory problems   Kasper Daniel Hansen
      • [BioC] DMR identification: minfi speed, memory problems   Allegra Petti
      • [BioC] DMR identification: minfi speed, memory problems   Kasper Daniel Hansen
      • [BioC] DMR identification: minfi speed, memory problems   Allegra Petti
• [BioC] bioMart request failed   Alejandra Medina [guest]
  • [BioC] bioMart request failed   Steffen Durinck
• [BioC] Get eset from GLP   Jerry Cholo
• [BioC] methyAnalysis for DMR identification   Allegra Petti [guest]
  • [BioC] methyAnalysis for DMR identification   Giovanni Calice
    • [BioC] methyAnalysis for DMR identification   Pan Du
      • [BioC] methyAnalysis for DMR identification   Allegra A. Petti
      • [BioC] methyAnalysis for DMR identification   Allegra A. Petti
      • [BioC] methyAnalysis for DMR identification   Pan Du
      • [BioC] methyAnalysis for DMR identification   Allegra Petti
    • [BioC] methyAnalysis for DMR identification   Allegra Petti
      • [BioC] methyAnalysis for DMR identification   Giovanni Calice
• [BioC] Significance of overlapping GO terms?   Tim Smith
• [BioC] Low number of replicates DESeq   Federico Gaiti
  • [BioC] Low number of replicates DESeq   Steve Lianoglou
    • [BioC] Low number of replicates DESeq   Federico Gaiti
      • [BioC] Low number of replicates DESeq   Steve Lianoglou
      • [BioC] Low number of replicates DESeq   Federico Gaiti
      • [BioC] Low number of replicates DESeq   Steve Lianoglou
      • [BioC] Low number of replicates DESeq   Federico Gaiti
      • [BioC] Low number of replicates DESeq   Steve Lianoglou
      • [BioC] Low number of replicates DESeq   Federico Gaiti
      • [BioC] Low number of replicates DESeq   Michael Love
      • [BioC] Low number of replicates DESeq   Simon Anders
      • [BioC] Low number of replicates DESeq   Federico Gaiti
      • [BioC] Low number of replicates DESeq   Michael Love
      • [BioC] Low number of replicates DESeq   Federico Gaiti
      • [BioC] Low number of replicates DESeq   Michael Love
      • [BioC] Low number of replicates DESeq   Federico Gaiti
      • [BioC] Low number of replicates DESeq   Michael Love
      • [BioC] Low number of replicates DESeq   Federico Gaiti
• [BioC] TxDb file for Drerio (ie zebrafish)   Brodsky, Michael
  • [BioC] TxDb file for Drerio (ie zebrafish)   James W. MacDonald
    • [BioC] TxDb file for Drerio (ie zebrafish)   Hervé Pagès
• [BioC] creating a qPCRset from Fluidigm 96*96 arrays in HTqPCR   Norm Allaire
  • [BioC] creating a qPCRset from Fluidigm 96*96 arrays in HTqPCR   Kipper Fletez-Brant
    • [BioC] creating a qPCRset from Fluidigm 96*96 arrays in HTqPCR   Norm Allaire
• [BioC] parsing discrete colors in pathview KEGG   Simran Azariah
  • [BioC] parsing discrete colors in pathview KEGG   Suleman Azariah
• [BioC] Error in combining GRanges objects into GRangesList object   Kalyan K Pasumarthy
  • [BioC] Error in combining GRanges objects into GRangesList object   Michael Lawrence
• [BioC] get parameters of estimateLogicle   Samuel [guest]
  • [BioC] get parameters of estimateLogicle   Mike
    • [BioC] get parameters of estimateLogicle   Samuel GRANJEAUD IR/INSERM
• [BioC] limma fit interpretation doubt   David Moriña Soler
  • [BioC] limma fit interpretation doubt   James W. MacDonald
    • [BioC] limma fit interpretation doubt   David Moriña Soler
      • [BioC] limma fit interpretation doubt   James W. MacDonald
• [BioC] HTqPCR- gene names not maintained in limmaCtData   Cornwell, Adam
• [BioC] Reading in mutiple files using readCtData   Norm Allaire
  • [BioC] Reading in mutiple files using readCtData   James W. MacDonald
    • [BioC] Reading in mutiple files using readCtData   Norm Allaire
      • [BioC] Reading in mutiple files using readCtData   James W. MacDonald
      • [BioC] Reading in mutiple files using readCtData   Kipper Fletez-Brant
      • [BioC] Reading in mutiple files using readCtData   Norm Allaire
• [BioC] DMRs   Giovanni Calice
• [BioC] Problem with NChannelSet objects using Agilent Data with arrayQualityMetrics package   Laurent.Pays
  • [BioC] Problem with NChannelSet objects using Agilent Data with arrayQualityMetrics package   Wolfgang Huber
• [BioC] WGCNA RNAseq   Anna Esteve Codina
• [BioC] CRLMM Annotation file   Venu Pullabhatla
  • [BioC] CRLMM Annotation file   James W. MacDonald
    • [BioC] CRLMM Annotation file   Venu Pullabhatla
      • [BioC] CRLMM Annotation file   James W. MacDonald
• [BioC] Using Biomart other than Ensembl   Daniela Moré [guest]
  • [BioC] Using Biomart other than Ensembl   James W. MacDonald
    • [BioC] Using Biomart other than Ensembl   James W. MacDonald
      • [BioC] Using Biomart other than Ensembl   Daniela Moré
• [BioC] Request for installation of software R2.13/Biconductor 2.8   Mayur Doke
  • [BioC] Request for installation of software R2.13/Biconductor 2.8   Dan Tenenbaum
• [BioC] Is there an expected coefficient of variation for the hybridization probe intensities among technical replicates?   Thornton, Matthew
  • [BioC] Is there an expected coefficient of variation for the hybridization probe intensities among technical replicates?   James W. MacDonald
    • [BioC] Is there an expected coefficient of variation for the hybridization probe intensities among technical replicates?   James W. MacDonald
  • [BioC] Is there an expected coefficient of variation for the hybridization probe intensities among technical replicates?   cstrato
• [BioC] First time use of limma for two-color agilent array analysis   Calin-Jageman, Robert
  • [BioC] First time use of limma for two-color agilent array analysis   James W. MacDonald
• [BioC] Repitools - featureScores - mappability Bsgenome object   Jaritz,Markus
• [BioC] Useful information about Ensembl release 75 mart databases   Thomas Maurel
  • [BioC] pathview - plotting multiple samples in the same graph?   Peter Davidsen
    • [BioC] pathview - plotting multiple samples in the same graph?   Luo Weijun
• [BioC] getGEO   Jerry Cholo
  • [BioC] getGEO   Sean Davis
• [BioC] Problems with robustPca in pcaMethods   J Brown [guest]
• [BioC] Power Calculation of multiple factors design of RNA-sequencing study   Yanzhu [guest]
• [BioC] CIGAR-aware coverage   chris warth
  • [BioC] CIGAR-aware coverage   Michael Lawrence
    • [BioC] CIGAR-aware coverage   chris warth
      • [BioC] CIGAR-aware coverage   Hervé Pagès
      • [BioC] CIGAR-aware coverage   Michael Lawrence
      • [BioC] CIGAR-aware coverage   Hervé Pagès
    • [BioC] CIGAR-aware coverage   Hervé Pagès
      • [BioC] CIGAR-aware coverage   Hervé Pagès
    • [BioC] CIGAR-aware coverage   Michael Lawrence
• [BioC] pileupAsGranges invalid times error   Katherine Yahvah
  • [BioC] pileupAsGranges invalid times error   Michael Lawrence
    • [BioC] pileupAsGranges invalid times error   Michael Lawrence
• [BioC] Questiond about the descrepancy between edgeR and limma-voom   Ming Yi
• [BioC] correlation analysis   Helen Smith
  • [BioC] correlation analysis   Steve Lianoglou
• [BioC] DART   Martin Garbe [guest]
  • [BioC] DART   Lawler, Katherine
• [BioC] Harvard Medical School Opening: Specialist, ETL, and Applicatoin Developer   Doe, Aimee

Last message date: Fri Feb 28 23:50:10 CET 2014
Archived on: Fri Feb 28 23:50:18 CET 2014

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