[BioC] BiSeq - readBismark error

[Dan Tenenbaum]

----- Original Message -----
> From: "David Iles" <D.E.Iles at leeds.ac.uk>
> To: "Hans-Ulrich Klein" <h.klein at uni-muenster.de>
> Cc: bioconductor at r-project.org
> Sent: Wednesday, February 5, 2014 10:00:32 AM
> Subject: Re: [BioC] BiSeq - readBismark error
> 
> Hi,
> 
> Thanks for the warning. When will the BiSeq 1.2.4 package be
> available? I’m about to start a methylation analysis ….


Assuming all goes well with the builds tonight, it should be available tomorrow morning around 11AM Seattle time.
Dan

> 
> Dr David Iles
> Visiting Research Fellow
> School of Biology
> University of Leeds
> Leeds LS2 9JT
> UK
> d.e.iles at leeds.ac.uk<mailto:d.e.iles at leeds.ac.uk>
> 
> 
> 
> 
> 
> 
> On 5 Feb 2014, at 17:29, Hans-Ulrich Klein
> <h.klein at uni-muenster.de<mailto:h.klein at uni-muenster.de>> wrote:
> 
> Dear all,
> 
> We would like to inform users of the BiSeq package, that there was in
> error in the readBismark() function that may - depending on the files
> and the order they were read in - lead to false methylation values.
> Affected BiSeq versions are 1.2.0 to 1.2.3.  If you have used one of
> these versions to read in Bismark output, we suggest to update to
> version 1.2.4 and compare the obtained methylation values. I am
> really
> sorry for this.
> 
> Best regards,
> Hans
> 
> --
> Dr. Hans-Ulrich Klein
> Institute of Medical Informatics
> University of Münster
> Albert-Schweitzer-Campus 1
> Gebäude A11
> 48149 Münster, Germany
> Tel.: +49 (0)251 83-58405
> 
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