February 2014 Archives by date
Starting: Sat Feb 1 03:24:13 CET 2014
Ending: Fri Feb 28 23:50:10 CET 2014
Messages: 682
- [BioC] Problem when trying to use \'affy\' package
Kaj Chokeshaiusaha
- [BioC] crlmm problem
Aaerp
- [BioC] crlmm problem
Aaerp
- [BioC] Problem with this package
Farahdeeba Shaikh
- [BioC] summarizeOverlaps colData does NOT contain countBam() summary data
Martin Morgan
- [BioC] minfi release 1.8
Tim Triche, Jr.
- [BioC] minfi release 1.8
Tim Triche, Jr.
- [BioC] Problem with this package
James W. MacDonald
- [BioC] crlmm problem
Matt Ritchie
- [BioC] Best way of presenting a sub-fraction of edgeR RNAseq gene expression results in a publication
Gordon K Smyth
- [BioC] EdgeR GOF plots
Gordon K Smyth
- [BioC] EdgeR: artifacts on BCV plot
Gordon K Smyth
- [BioC] EdgeR: artifacts on BCV plot
Gordon K Smyth
- [BioC] EdgeR: artifacts on BCV plot
Ryan
- [BioC] EdgeR: artifacts on BCV plot
Adriaan Sticker
- [BioC] EdgeR LogCpm and LogFC values calculation
Gordon K Smyth
- [BioC] edgeR: fold change reported by exactTest for zero values of rna-seq
Gordon K Smyth
- [BioC] EdgeR: artifacts on BCV plot
Gordon K Smyth
- [BioC] EdgeR: artifacts on BCV plot
Gordon K Smyth
- [BioC] EdgeR LogCpm and LogFC values calculation
Koen Van den Berge
- [BioC] EdgeR: artifacts on BCV plot
Adriaan Sticker
- [BioC] prior df estimation of estimateDisp function
Koen Van den Berge
- [BioC] EdgeR LogCpm and LogFC values calculation
Gordon K Smyth
- [BioC] EdgeR: artifacts on BCV plot
Gordon K Smyth
- [BioC] Identifying genes that contribute to limma's roast/romer gene set enrichments
Gordon K Smyth
- [BioC] Pathview with minor species
Luo Weijun
- [BioC] Updating issues
Kyle Lambert [guest]
- [BioC] EdgeR: artifacts on BCV plot
Adriaan Sticker
- [BioC] selecting score(GRanges_object) based on coordinates
Philip Lijnzaad
- [BioC] selecting score(GRanges_object) based on coordinates
Philip Lijnzaad
- [BioC] Updating issues
Julian Gehring
- [BioC] Updating issues
Michael Love
- [BioC] selecting score(GRanges_object) based on coordinates
Michael Lawrence
- [BioC] minfi release 1.8
CT
- [BioC] Gviz pacakge
Hahne, Florian
- [BioC] selecting score(GRanges_object) based on coordinates
Philip Lijnzaad
- [BioC] biogrid cytoscape plugin
Helen Smith
- [BioC] plotting both
Mark Carty [guest]
- [BioC] biogrid cytoscape plugin
Dan Tenenbaum
- [BioC] biogrid cytoscape plugin
Helen Smith
- [BioC] How to compare GO results in goprofile
Bai, Bing
- [BioC] biogrid cytoscape plugin
Paul Shannon
- [BioC] selecting score(GRanges_object) based on coordinates
Michael Lawrence
- [BioC] plotting both
Hu, Ying (NIH/NCI) [E]
- [BioC] Ontology
Marc Carlson
- [BioC] DEXseq error on estimatelog2FoldChanges
Fabrice Tourre
- [BioC] DAVIDQuery
Assa Yeroslaviz
- [BioC] EdgeR: GoF plot and prior df
Gordon K Smyth
- [BioC] prior df estimation of estimateDisp function
Gordon K Smyth
- [BioC] DAVIDQuery
Dan Tenenbaum
- [BioC] variantAnnotation: alternative GENETIC_CODE, and circular chromosomes?
Janet Young
- [BioC] EdgeR: GoF plot and prior df
Adriaan Sticker
- [BioC] DEXseq error on estimatelog2FoldChanges
Alejandro Reyes
- [BioC] variantAnnotation: alternative GENETIC_CODE, and circular chromosomes?
Hervé Pagès
- [BioC] DAVIDQuery
Cristobal Fresno Rodríguez
- [BioC] DEXseq error on estimatelog2FoldChanges
Fabrice Tourre
- [BioC] DEXseq error on estimatelog2FoldChanges
Alejandro Reyes
- [BioC] DEXseq error on estimatelog2FoldChanges
Fabrice Tourre
- [BioC] DEXseq error on estimatelog2FoldChanges
Fabrice Tourre
- [BioC] Error reading case study BeadStudio profiles with read.ilmn in limma
Tim Kendall
- [BioC] read.ilmn in limma 3.18.10
Scott Christley
- [BioC] Problem with filtering genes in biomaRt
Pieta Schofield [guest]
- [BioC] Problems with per package download statistics
heyi xiao
- [BioC] Problems with per package download statistics
heyi xiao
- [BioC] limma-voom
Ming Yi
- [BioC] variantAnnotation: alternative GENETIC_CODE, and circular chromosomes?
Valerie Obenchain
- [BioC] variantAnnotation: alternative GENETIC_CODE, and circular chromosomes?
Janet Young
- [BioC] variantAnnotation: alternative GENETIC_CODE, and circular chromosomes?
Valerie Obenchain
- [BioC] Seattle Short Course, Feb 27-28: Introduction to Bioconductor for Sequence Analysis
Martin Morgan
- [BioC] prior df estimation of estimateDisp function
Koen Van den Berge
- [BioC] limma lmFit returns different results on different computers
Pavel Fedotov [guest]
- [BioC] Gene Ontology Annotations from Gene Names
Joseph Shaw [guest]
- [BioC] Error reading case study BeadStudio profiles with read.ilmn in limma
Gordon K Smyth
- [BioC] Design/Contrast Matrix for Two Channel Microarray
Joseph Shaw [guest]
- [BioC] read.ilmn in limma 3.18.10
Gordon K Smyth
- [BioC] variantAnnotation: alternative GENETIC_CODE, and circular chromosomes?
Janet Young
- [BioC] variantAnnotation: alternative GENETIC_CODE, and circular chromosomes?
Steve Lianoglou
- [BioC] BSgenomes pig
Miskey, Csaba
- [BioC] error ReadAffy
n omranian
- [BioC] Error messege in edgeR: Error in t(y) + prior.count.scaled : non-conformable arrays
Navonil De Sarkar
- [BioC] Gene Ontology Annotations from Gene Names
James W. MacDonald
- [BioC] error ReadAffy
James W. MacDonald
- [BioC] error ReadAffy
n omranian
- [BioC] error ReadAffy
Hooiveld, Guido
- [BioC] error ReadAffy
James W. MacDonald
- [BioC] error ReadAffy
n omranian
- [BioC] DESeq2 error
Dong, Xianjun
- [BioC] BiSeq - readBismark error
Hans-Ulrich Klein
- [BioC] DESeq2 error
Michael Love
- [BioC] BiSeq - readBismark error
David Iles
- [BioC] BiSeq - readBismark error
Dan Tenenbaum
- [BioC] IRanges/List oddity: do.call of `c` on a list of IRangesList returns
malcolm cook
- [BioC] BiSeq - readBismark error
Katja Hebestreit
- [BioC] Gene Ontology Annotations from Gene Names
Joseph Shaw
- [BioC] error ReadAffy
n omranian
- [BioC] Error messege in edgeR: Error in t(y) + prior.count.scaled : non-conformable arrays
Steve Lianoglou
- [BioC] Tigre Package question
Solanki, Anisha
- [BioC] Gene Ontology Annotations from Gene Names
James W. MacDonald
- [BioC] DESeq2 error
Michael Love
- [BioC] subsetting SummarizedExperiments - a proposal (or a hack?)
Cook, Malcolm
- [BioC] in-group missing arrayQualityMetrics()
guest [guest]
- [BioC] VariantAnnotation - Accessing specific genomic ranges without needing a tabix file
Fong Chun Chan
- [BioC] subsetting SummarizedExperiments - a proposal (or a hack?)
Steve Lianoglou
- [BioC] limma-voom
Gordon K Smyth
- [BioC] Bioconductor Digest, Vol 132, Issue 5
Gordon K Smyth
- [BioC] VariantAnnotation - Accessing specific genomic ranges without needing a tabix file
Michael Lawrence
- [BioC] prior df estimation of estimateDisp function
Gordon K Smyth
- [BioC] VariantAnnotation - Accessing specific genomic ranges without needing a tabix file
Fong Chun Chan
- [BioC] limma lmFit returns different results on different computers
Gordon K Smyth
- [BioC] VariantAnnotation R Package - Merging Two VCF files
Fong Chun Chan
- [BioC] limma-voom
Steve Lianoglou
- [BioC] Design/Contrast Matrix for Two Channel Microarray
Gordon K Smyth
- [BioC] VariantAnnotation R Package - Merging Two VCF files
Michael Lawrence
- [BioC] Design/Contrast Matrix for Two Channel Microarray
Joseph Shaw
- [BioC] limma lmFit returns different results on different computers
Kasper Daniel Hansen
- [BioC] subsetting SummarizedExperiments - a proposal (or a hack?)
Martin Morgan
- [BioC] subsetting SummarizedExperiments - a proposal (or a hack?)
Martin Morgan
- [BioC] subsetting SummarizedExperiments - a proposal (or a hack?)
Martin Morgan
- [BioC] Design/Contrast Matrix for Two Channel Microarray
Gordon K Smyth
- [BioC] limma-voom
Jeremy Ng
- [BioC] limma-voom
Tim Triche, Jr.
- [BioC] subsetting SummarizedExperiments - a proposal (or a hack?)
Cook, Malcolm
- [BioC] questions on edgeR package
Gordon K Smyth
- [BioC] liimma and Across Array Normalisation
Saket Choudhary
- [BioC] liimma and Across Array Normalisation
Gordon K Smyth
- [BioC] Tigre Package question
Antti Honkela
- [BioC] Defining the model matrix for a multi-factorial design with interactions - edgeR
Marco Pegoraro
- [BioC] significant differential genes disappear after including a covariance
Michael Love
- [BioC] liimma and Across Array Normalisation
Saket Choudhary
- [BioC] Normalization of RNAseq data using ERCC?
Agnes Paquet
- [BioC] questions on edgeR package
Yi, Ming (NIH/NCI) [C]
- [BioC] limma-voom
Yi, Ming (NIH/NCI) [C]
- [BioC] DEXSeq - too many exons in gene
António domingues
- [BioC] Defining the model matrix for a multi-factorial design with interactions - edgeR
Ryan
- [BioC] DEXSeq - too many exons in gene
Steve Lianoglou
- [BioC] DEXSeq - too many exons in gene
Steve Lianoglou
- [BioC] DEXSeq - too many exons in gene
António domingues
- [BioC] DEXSeq - too many exons in gene
Devon Ryan
- [BioC] DEXSeq - too many exons in gene
Antonio Domingues
- [BioC] questions on edgeR package
Gordon K Smyth
- [BioC] problem with waveTiling package
Yanwu Guo
- [BioC] edgeR: prior.n question
Jason Miller
- [BioC] Error messege in edgeR: Error in t(y) + prior.count.scaled : non-conformable arrays
Gordon K Smyth
- [BioC] edgeR and prior.n
Jason Miller
- [BioC] in-group missing arrayQualityMetrics()
Wolfgang Huber
- [BioC] What RNA-Seq expression estimates to use for plotting to show voom/limma Differential expression
Heather Estrella
- [BioC] Gene Ontology Annotations from Gene Names
Joseph Shaw
- [BioC] questions on edgeR package
Ming Yi
- [BioC] edgeR: adjusting prior.n
J [guest]
- [BioC] Problem with filtering genes in biomaRt
Thomas Maurel
- [BioC] Normalization of Illumina Array with separate bgx-file
Stefanie Busch
- [BioC] edgeR, multifactorial design
Mike Miller
- [BioC] DEXSeq - too many exons in gene
Alejandro Reyes
- [BioC] EdgeR multi-factor testing questions
Yanzhu [guest]
- [BioC] Rcade analysis without ChIP-seq replicates
André Faure
- [BioC] Problem with filtering genes in biomaRt
Steffen Durinck
- [BioC] error in calculate integer copy numbers. bug?
Johnbosco [guest]
- [BioC] Problem with filtering genes in biomaRt
Thomas Maurel
- [BioC] Problem with filtering genes in biomaRt
Thomas Maurel
- [BioC] DEXSeq - too many exons in gene
António domingues
- [BioC] Why nbinomGLMTest in DESeq reports zero p values
Yanzhu [guest]
- [BioC] Problem with filtering genes in biomaRt
Thomas Maurel
- [BioC] Problem with filtering genes in biomaRt
Steve Lianoglou
- [BioC] edgeR - zero values
Laura Eierman
- [BioC] edgeR - zero values
James W. MacDonald
- [BioC] Problems with per package download statistics
Dan Tenenbaum
- [BioC] variantAnnotation: alternative GENETIC_CODE, and circular chromosomes?
Valerie Obenchain
- [BioC] Rcade analysis without ChIP-seq replicates
Jonathan Cairns
- [BioC] in-group missing arrayQualityMetrics()
Kasoji, Manjula (NIH/NCI) [C]
- [BioC] DEXSeq - too many exons in gene
Steve Lianoglou
- [BioC] How to get gene symbol after deseq?
Fabrice Tourre
- [BioC] error in calculate integer copy numbers. bug?
Günter Klambauer
- [BioC] How to get gene symbol after deseq?
James W. MacDonald
- [BioC] How to get gene symbol after deseq?
Fabrice Tourre
- [BioC] How to get gene symbol after deseq?
James W. MacDonald
- [BioC] Normalization of RNAseq data using ERCC?
Davis, Wade
- [BioC] How to get gene symbol after deseq?
Fabrice Tourre
- [BioC] How to get gene symbol after deseq?
Steve Lianoglou
- [BioC] How to get gene symbol after deseq?
Fabrice Tourre
- [BioC] edgeR: adjusting prior.n
Gordon K Smyth
- [BioC] What RNA-Seq expression estimates to use for plotting to show voom/limma Differential expression
Gordon K Smyth
- [BioC] minfi release 1.8
Smeeta Shrestha
- [BioC] cluster or pattern analysis of expression and CN data of cell lines
Chen Runtian
- [BioC] in-group missing arrayQualityMetrics()
Wolfgang Huber
- [BioC] in-group missing arrayQualityMetrics()
Wolfgang Huber
- [BioC] referencecn.mops: limit on number of tumor-normal pairs?
Johnbosco [guest]
- [BioC] subsetting SummarizedExperiments - a proposal (or a hack?)
Michael Lawrence
- [BioC] cluster or pattern analysis of expression and CN data of cell lines
Tim Triche, Jr.
- [BioC] liimma and Across Array Normalisation
Saket Choudhary
- [BioC] Coercion lumi/minfi objects
Aileen Bahl
- [BioC] Why nbinomGLMTest in DESeq reports zero p values
Wolfgang Huber
- [BioC] referencecn.mops: workaround
Günter Klambauer
- [BioC] Draft support for HTA 2.0 with oligo
Benilton Carvalho
- [BioC] edgeR glmLRT pearson residual
Laura Eierman
- [BioC] variantAnnotation: alternative GENETIC_CODE, and circular chromosomes?
Taylor, Sean D
- [BioC] What RNA-Seq expression estimates to use for plotting to show voom/limma Differential expression
Gordon K Smyth
- [BioC] liimma and Across Array Normalisation
Gordon K Smyth
- [BioC] Normalization of Illumina Array with separate bgx-file
Gordon K Smyth
- [BioC] EdgeR multi-factor testing questions
Gordon K Smyth
- [BioC] edgeR, multifactorial design
Gordon K Smyth
- [BioC] FW: Tigre Package question 2
Solanki, Anisha
- [BioC] DESeq2 high fold change values for comparison of samples with zero counts
Noa Henig
- [BioC] Tigre Package question 2
Solanki, Anisha
- [BioC] DESeq2 high fold change values for comparison of samples with zero counts
Michael Love
- [BioC] DESeq2 high fold change values for comparison of samples with zero counts
Michael Love
- [BioC] liimma and Across Array Normalisation
Saket Choudhary
- [BioC] limma differences with and without an intercept
Rory Kirchner [guest]
- [BioC] edgeR glmLRT pearson residual
Gordon K Smyth
- [BioC] maSigPro help- p. vector error
Audra [guest]
- [BioC] Join us at Biocuration 2014 Conference
Robin Haw
- [BioC] Draft support for HTA 2.0 with oligo
Mark Cowley
- [BioC] Tigre Package question 2
Antti Honkela
- [BioC] AgiMicroRna -1 filtered values
Coonen Maarten (TGX)
- [BioC] Rcade analysis without ChIP-seq replicates
André Faure
- [BioC] ReportingTools and gene annotation
Ugo Borello
- [BioC] cn.mops
Günter Klambauer
- [BioC] Problem with exporting graph from plotPCA() in a DESeq2 function
Fabrice Chatonnet [guest]
- [BioC] error in DEXSeq fitDispersionFunction()
Odhams, Christopher
- [BioC] Problem with exporting graph from plotPCA() in a DESeq2 function
Michael Love
- [BioC] error in DEXSeq fitDispersionFunction()
Odhams, Christopher
- [BioC] Problem with exporting graph from plotPCA() in a DESeq2 function
Ugo Borello
- [BioC] mzR installation
gtsiliki at bioacademy.gr
- [BioC] Problem with exporting graph from plotPCA() in a DESeq2 function
Fabrice Chatonnet
- [BioC] readGAlignmentPairsFromBam and readGAlignmentFromBam differences
Emmanouela Repapi [guest]
- [BioC] Problem with exporting graph from plotPCA() in a DESeq2 function
Wolfgang Huber
- [BioC] ReportingTools and gene annotation
James W. MacDonald
- [BioC] DESeq2 - input data questions
Ming Yi
- [BioC] error in DEXSeq fitDispersionFunction()
Wolfgang Huber
- [BioC] Problem with exporting graph from plotPCA() in a DESeq2 function
Ugo Borello
- [BioC] error in DEXSeq fitDispersionFunction()
Wolfgang Huber
- [BioC] Failure to Install Organism Package from AnnotationForge
Joseph Shaw [guest]
- [BioC] Gene Ontology Annotations from Gene Names
James W. MacDonald
- [BioC] DESeq2 - input data questions
Michael Love
- [BioC] variantAnnotation: alternative GENETIC_CODE, and circular chromosomes?
Valerie Obenchain
- [BioC] zero values and lib.size
J [guest]
- [BioC] ReportingTools and gene annotation
Michael Lawrence
- [BioC] active subnetwork determination
Sidders, Benjamin
- [BioC] zero values and lib.size
James W. MacDonald
- [BioC] active subnetwork determination
Paul Shannon
- [BioC] removing some mcols from tallyVariants output
Michael Lawrence
- [BioC] mzR install requires deprecated header file
Rob [guest]
- [BioC] mzR installation
Dan Tenenbaum
- [BioC] mzR install requires deprecated header file
James W. MacDonald
- [BioC] mzR install requires deprecated header file
Rob Smith
- [BioC] EdgeR norm.factor input
Yanzhu [guest]
- [BioC] Gene Ontology Annotations from Gene Names
Marc Carlson
- [BioC] [devteam-bioc] readGAlignmentPairsFromBam and readGAlignmentFromBam differences
Valerie Obenchain
- [BioC] limma differences with and without an intercept
Gordon K Smyth
- [BioC] Gene Ontology Annotations from Gene Names
Joseph Shaw
- [BioC] Identifying Processes as Upregulated or Downregulated
Joseph Shaw
- [BioC] BSgenomes pig
Hervé Pagès
- [BioC] Biocuration 2014 Abstract Deadline Extended by 24 Hours
Robin Haw
- [BioC] EdgeR norm.factor input
Gordon K Smyth
- [BioC] Update in the gage RNA-seq pathway analysis joint workflow
Luo Weijun
- [BioC] mzR installation
Dirk Eddelbuettel
- [BioC] [devteam-bioc] readGAlignmentPairsFromBam and readGAlignmentFromBam differences
Hervé Pagès
- [BioC] mzR installation
Dan Tenenbaum
- [BioC] mzR installation
Dan Tenenbaum
- [BioC] mzR installation
Dan Tenenbaum
- [BioC] mzR install requires deprecated header file
Dan Tenenbaum
- [BioC] cluster or pattern analysis of expression and CN data of cell lines
Chen Runtian
- [BioC] mzR installation
gtsiliki at bioacademy.gr
- [BioC] AgiMicroRna -1 filtered values
Coonen Maarten (TGX)
- [BioC] liimma and Across Array Normalisation
Saket Choudhary
- [BioC] FW: Tigre Package question 3
Solanki, Anisha
- [BioC] Tigre Package question 3
Antti Honkela
- [BioC] Tigre Package question 3
Solanki, Anisha
- [BioC] DESeq2 high fold change values for comparison of samples with zero counts
Noa Henig
- [BioC] DESeq2 high fold change values for comparison of samples with zero counts
Michael Love
- [BioC] Identifying Processes as Upregulated or Downregulated
James W. MacDonald
- [BioC] liimma and Across Array Normalisation
James W. MacDonald
- [BioC] DESeq for differentiating highly expressed genes
Liang, Chun
- [BioC] AgiMicroRna -1 filtered values
Steve Lianoglou
- [BioC] DESeq for differentiating highly expressed genes
Steve Lianoglou
- [BioC] EdgeR norm.factors input
Yanzhu [guest]
- [BioC] RMA on Exon Array NaN values
Nicolas Servant
- [BioC] [devteam-bioc] readGAlignmentPairsFromBam and readGAlignmentFromBam differences
Emmanouela Repapi
- [BioC] DESeq2 - input data questions
Ming Yi
- [BioC] liimma and Across Array Normalisation
Saket Choudhary
- [BioC] ReportingTools and gene annotation
Ugo Borello
- [BioC] DESeq2 - input data questions
Steve Lianoglou
- [BioC] DiffBind loading Problem
Rory Stark
- [BioC] CNTools error: *** caught segfault ***address (nil), cause 'unknown'
ying chen
- [BioC] DESeq2 - input data questions
Michael Love
- [BioC] DESeq2 - input data questions
Ming Yi
- [BioC] DiffBind loading Problem
Rory Stark
- [BioC] DESeq2 - input data questions
Michael Love
- [BioC] RMA on Exon Array NaN values
Benilton Carvalho
- [BioC] Can we use Intraclass correlation (ICC) to optimize clustering parameters?
Rafi [guest]
- [BioC] RMA on Exon Array NaN values
Nicolas Servant
- [BioC] Identifying Processes as Upregulated or Downregulated
Joseph Shaw
- [BioC] Filtering Post-Normalization With limma
Matt Jones [guest]
- [BioC] How limma Deals With Correlation Across Replicates
Matt Jones [guest]
- [BioC] Identifying Processes as Upregulated or Downregulated
James W. MacDonald
- [BioC] error with pd.ragene1.0.st.v1 and oligo
Ian [guest]
- [BioC] Can we use Intraclass correlation (ICC) to optimize clustering parameters?
Tim Triche, Jr.
- [BioC] RMA on Exon Array NaN values
Benilton Carvalho
- [BioC] liimma and Across Array Normalisation
Gordon K Smyth
- [BioC] liimma and Across Array Normalisation
Saket Choudhary
- [BioC] liimma and Across Array Normalisation
Gordon K Smyth
- [BioC] liimma and Across Array Normalisation
Saket Choudhary
- [BioC] liimma and Across Array Normalisation
Gordon K Smyth
- [BioC] liimma and Across Array Normalisation
Gordon K Smyth
- [BioC] Can we use Intraclass correlation (ICC) to optimize clustering parameters?
Peter Langfelder
- [BioC] liimma and Across Array Normalisation
Saket Choudhary
- [BioC] EdgeR norm.factors input
Gordon K Smyth
- [BioC] liimma and Across Array Normalisation
Steve Lianoglou
- [BioC] Paired Data Analysis in baySeq package
zhao shilin
- [BioC] AgiMicroRna -1 filtered values
Coonen Maarten (TGX)
- [BioC] Fwd: Paired Data Analysis in baySeq package
Tom Hardcastle
- [BioC] GO-Pathways using RDAVIDWebService
Fazulur Rehaman
- [BioC] How limma Deals With Correlation Across Replicates
Gordon K Smyth
- [BioC] DiffBind error loading dba
Rory Stark
- [BioC] GO-Pathways using RDAVIDWebService
Cristobal Fresno Rodríguez
- [BioC] GO-Pathways using RDAVIDWebService
Fazulur Rehaman
- [BioC] DESeq2 test over all timepoints?
Hickman, R.J. (Richard)
- [BioC] DESeq2 test over all timepoints?
Michael Love
- [BioC] DESeq2 test over all timepoints?
Hickman, R.J. (Richard)
- [BioC] Fwd: Paired Data Analysis in baySeq package
zhao shilin
- [BioC] How limma Deals With Correlation Across Replicates
Matt Jones
- [BioC] error with pd.ragene1.0.st.v1 and oligo
Ian B Stanaway
- [BioC] error with pd.ragene1.0.st.v1 and oligo
Benilton Carvalho
- [BioC] error with pd.ragene1.0.st.v1 and oligo
Ian B Stanaway
- [BioC] AgiMicroRna -1 filtered values
Steve Lianoglou
- [BioC] error with pd.ragene1.0.st.v1 and oligo
Ian B Stanaway
- [BioC] How limma Deals With Correlation Across Replicates
Gordon K Smyth
- [BioC] How to normalize to input with polysome fractionation samples before running edgeR
Scott Daniel
- [BioC] error with pd.ragene1.0.st.v1 and oligo
Benilton Carvalho
- [BioC] filtering probes in affymetrix data
Sabet, Julia A
- [BioC] error with pd.ragene1.0.st.v1 and oligo
Benilton Carvalho
- [BioC] Fwd: Paired Data Analysis in baySeq package
Tom Hardcastle
- [BioC] filtering probes in affymetrix data
James W. MacDonald
- [BioC] similar package
n omranian
- [BioC] reodering a GRanges object by its metadata
d r
- [BioC] filtering probes in affymetrix data
Sabet, Julia A
- [BioC] filtering probes in affymetrix data
James W. MacDonald
- [BioC] Coercion lumi/minfi objects
Tim Triche, Jr.
- [BioC] Rcade analysis without ChIP-seq replicates
Jonathan Cairns
- [BioC] reodering a GRanges object by its metadata
Martin Morgan
- [BioC] subsetting SummarizedExperiments - a proposal (or a hack?)
Cook, Malcolm
- [BioC] getGEO and further analyzing of data by bioconductor
Jerry Cholo
- [BioC] getGEO and further analyzing of data by bioconductor
Tim Triche, Jr.
- [BioC] getGEO and then analyzing the data
Jerry Cholo
- [BioC] questions related to DiffBind package
Rory Stark
- [BioC] Rcade analysis without ChIP-seq replicates
André Faure
- [BioC] filtering probes in affymetrix data
Sabet, Julia A
- [BioC] Please add me to the Dropbox containing the vignette data
Rory Stark
- [BioC] getGEO and then analyzing the data
Sean Davis
- [BioC] filtering probes in affymetrix data
Sean Davis
- [BioC] filtering probes in affymetrix data
James W. MacDonald
- [BioC] filtering probes in affymetrix data
Sabet, Julia A
- [BioC] getGEO and further analyzing of data by bioconductor
Sean Davis
- [BioC] filtering probes in affymetrix data
James W. MacDonald
- [BioC] filtering probes in affymetrix data
Sabet, Julia A
- [BioC] filtering probes in affymetrix data
James W. MacDonald
- [BioC] filtering probes in affymetrix data
Sabet, Julia A
- [BioC] filtering probes in affymetrix data
Sabet, Julia A
- [BioC] reodering a GRanges object by its metadata
Michael Lawrence
- [BioC] GEOquery error when retrieving raw files
Ying Chen
- [BioC] Please add me to the Dropbox containing the vignette data
Blum, Roy
- [BioC] GEOquery error when retrieving raw files
Sean Davis
- [BioC] filtering probes in affymetrix data
James W. MacDonald
- [BioC] filtering probes in affymetrix data
Sabet, Julia A
- [BioC] filtering probes in affymetrix data
James W. MacDonald
- [BioC] Identifying Processes as Upregulated or Downregulated
Joseph Shaw
- [BioC] goseq: pwf: Error in if (hi <= low) { : missing value where TRUE/FALSE needed
刘鹏飞
- [BioC] subsetting SummarizedExperiments - a proposal (or a hack?)
Cook, Malcolm
- [BioC] Different probesets but same expression values?
David
- [BioC] bypassing firewall - destination ip address
Kishor Tappita
- [BioC] Tigre Package question 3
Antti Honkela
- [BioC] bypassing firewall - destination ip address
Dan Tenenbaum
- [BioC] Student Internships at Illumina Cambridge Ltd, UK
Adrian Alexa
- [BioC] Different probesets but same expression values?
James W. MacDonald
- [BioC] DiffBind (Please add me to the Dropbox containing the vignette data)
Rory Stark
- [BioC] DiffBind (Please add me to the Dropbox containing the vignette data)
Blum, Roy
- [BioC] subsetting SummarizedExperiments - a proposal (or a hack?)
Steve Lianoglou
- [BioC] subsetting SummarizedExperiments - a proposal (or a hack?)
Martin Morgan
- [BioC] WGCNA
Jerry Cholo
- [BioC] WGCNA
Tim Triche, Jr.
- [BioC] WGCNA
Tim Triche, Jr.
- [BioC] Error in x[["Version"]] : subscript out of bounds
Jerry Cholo
- [BioC] WGCNA
Peter Langfelder
- [BioC] WGCNA
Peter Langfelder
- [BioC] Memory problem with rma()
Damian Plichta [guest]
- [BioC] minOverlap in DiffBind in R- what does it mean?
Rory Stark
- [BioC] WGCNA
Martin Morgan
- [BioC] Memory problem with rma()
Sean Davis
- [BioC] Memory problem with rma()
plichta at cbs.dtu.dk
- [BioC] Memory problem with rma()
Benilton Carvalho
- [BioC] WGCNA
Peter Langfelder
- [BioC] limma for time course dataset
Joseph J Hou
- [BioC] WGCNA
Martin Morgan
- [BioC] WGCNA
Peter Langfelder
- [BioC] Memory problem with rma()
plichta at cbs.dtu.dk
- [BioC] Memory problem with rma()
Benilton Carvalho
- [BioC] bypassing firewall - destination ip address
Kishor Tappita
- [BioC] How does pathview deal with enzyme with several coding genes?
刘鹏飞
- [BioC] How does pathview deal with enzyme with several coding genes?
刘鹏飞
- [BioC] Gviz problem to extract some track with UcscTrack like Broad ChromHMM
Hahne, Florian
- [BioC] Problems with using Pearson correlation in hcluster / hclust2treeview
Eric Liaw [guest]
- [BioC] bypassing firewall - destination ip address
Kishor Tappita
- [BioC] How to add labels to dots in the datatrack in Gviz?
sh. chunxuan
- [BioC] Memory problem with rma()
cstrato
- [BioC] Minfi "mapToGenome" error when attempting to generate a genomicRatioSet
Kasper Daniel Hansen
- [BioC] Minfi "mapToGenome" error when attempting to generate a genomicRatioSet
Dale Watkins
- [BioC] Memory problem with rma()
Steve Piccolo
- [BioC] crlmm : copy number and genotyping of Illumina data
Abhishek Pratap
- [BioC] how to determine what kind of dispersion to use
J [guest]
- [BioC] platform design info for primeview arrays for oligo package
Anthony Bosco
- [BioC] How does pathview deal with enzyme with several coding genes?
Luo Weijun
- [BioC] how to determine what kind of dispersion to use
Ryan
- [BioC] Non-specific filtering of Affymetrix Microarray data
Vinay Randhawa [guest]
- [BioC] limma for time course dataset 2
Joseph J Hou
- [BioC] Limma design : What is the "best" method to infer biological replicates during differentially expression analysis
Santy Marques-Ladeira
- [BioC] How does pathview deal with enzyme with several coding genes?
刘鹏飞
- [BioC] platform design info for primeview arrays for oligo package
James W. MacDonald
- [BioC] Packages not in BioC or CRAN
Samuel Younkin
- [BioC] Packages not in BioC or CRAN
Martin Morgan
- [BioC] limma - special case of contrasting
Mitja Mitrovic
- [BioC] fRMA- more issues with custom CDFs
Cornwell, Adam
- [BioC] Minfi "mapToGenome" error when attempting to generate a genomicRatioSet
Kasper Daniel Hansen
- [BioC] edgeR: regarding Poisson distribution and goodness of fit graph
J [guest]
- [BioC] DESeq2
Shobana Sekar [guest]
- [BioC] DESeq2
Michael Love
- [BioC] DESeq2
SSekar at tgen.org
- [BioC] DESeq2
Michael Love
- [BioC] fRMA- more issues with custom CDFs
Matthew McCall
- [BioC] Problem in limma-voom
Ming Yi
- [BioC] IRanges/List oddity: do.call of `c` on a list of IRangesList returns
Hervé Pagès
- [BioC] ComBat: 2 adjustment variables & continuous adjustment variables
Magda Price
- [BioC] limma for time course dataset 2
Yunshun Chen
- [BioC] limma for time course dataset 2
houjue at cmpt.ac.cn
- [BioC] limma for time course dataset 2
Yunshun Chen
- [BioC] limma for time course dataset 2
houjue at cmpt.ac.cn
- [BioC] limma for time course dataset 2
Yunshun Chen
- [BioC] platform design info for primeview arrays for oligo package
Anthony Bosco
- [BioC] crlmm : copy number and genotyping of Illumina data
Matt Ritchie
- [BioC] Problem in limma-voom
Gordon K Smyth
- [BioC] Problem in limma-voom
Ming Yi
- [BioC] Non-specific filtering of Affymetrix Microarray data
Wolfgang Huber
- [BioC] Gviz output extra empty page on pdf device
Dan Du
- [BioC] flowcore/flowviz filter
Nacho [guest]
- [BioC] Problem in limma-voom
Steve Lianoglou
- [BioC] Problem in limma-voom
Ming Yi
- [BioC] flowcore/flowviz filter
Mike
- [BioC] filtering probes in affymetrix data
Sabet, Julia A
- [BioC] filtering probes in affymetrix data
James W. MacDonald
- [BioC] DESeq2 preprint
Michael Love
- [BioC] AnnotatedDataFrame metadata bug?
Adrienne Stilp
- [BioC] using rma() on XYS files using oligo package
James Yousin
- [BioC] edgeR: regarding Poisson distribution and goodness of
Yunshun Chen
- [BioC] AnnotatedDataFrame metadata bug?
Martin Morgan
- [BioC] Limma design : What is the "best" method to infer biological replicates during differentially expression analysis
Gordon K Smyth
- [BioC] Limma design : What is the "best" method to infer biological replicates during differentially expression analysis
Gordon K Smyth
- [BioC] using rma() on XYS files using oligo package
Benilton Carvalho
- [BioC] FlowViz and FlowStats Interaction in Gates on densityplots
Aric Gregson
- [BioC] reordering the x-axis
Assa Yeroslaviz
- [BioC] dexseq_count.py SAM "NH" taq
Jose Manuel Garcia Manteiga
- [BioC] dexseq_count.py SAM "NH" taq
Jose Garcia
- [BioC] dexseq_count.py SAM "NH" taq
Alejandro Reyes
- [BioC] Questions about GOseq after DESeq2
amandine.fournier at chu-lyon.fr
- [BioC] dexseq_count.py SAM "NH" taq
Jose Garcia
- [BioC] Questions about GOseq after DESeq2
Bernd Klaus
- [BioC] Questions about GOseq after DESeq2
Bernd Klaus
- [BioC] Questions about GOseq after DESeq2
Michael Love
- [BioC] limma design matrix missing a Date column
Sabet, Julia A
- [BioC] Limma design : What is the
Santy Marques-Ladeira
- [BioC] limma design matrix missing a Date column
James W. MacDonald
- [BioC] trouble in loading heatmap.2
Wei Xu
- [BioC] using rma() on XYS files using oligo package
James Yousin
- [BioC] trouble in loading heatmap.2
James W. MacDonald
- [BioC] ComBat: 2 adjustment variables & continuous adjustment variables
Johnson, William Evan
- [BioC] no significant differences in gene expression-limma
Sabet, Julia A
- [BioC] How does pathview deal with enzyme with several coding genes?
Luo Weijun
- [BioC] How does pathview deal with enzyme with several coding genes?
Luo Weijun
- [BioC] Gviz problem to extract some track with UcscTrack like Broad ChromHMM
Hahne, Florian
- [BioC] using rma() on XYS files using oligo package
Benilton Carvalho
- [BioC] using rma() on XYS files using oligo package
Benilton Carvalho
- [BioC] Bug in GSVA with methods other than default?
Jonathan Manning
- [BioC] Bug in GSVA with methods other than default?
Jonathan Manning
- [BioC] Bug in GSVA with methods other than default?
Sonja Haenzelmann
- [BioC] trouble in loading heatmap.2
Wei Xu
- [BioC] Gviz problem to extract some track with UcscTrack like Broad ChromHMM
Michael Lawrence
- [BioC] Gviz problem to extract some track with UcscTrack like Broad ChromHMM
Hahne, Florian
- [BioC] Bug in GSVA with methods other than default?
Jonathan Manning
- [BioC] Bug in GSVA with methods other than default?
Sonja Haenzelmann
- [BioC] Bug in GSVA with methods other than default?
Jonathan Manning
- [BioC] Bug in GSVA with methods other than default?
Robert Castelo
- [BioC] Can't install Rgraphviz
Enrico Ferrero
- [BioC] Can't install Rgraphviz
Kasper Daniel Hansen
- [BioC] Can't install Rgraphviz
Enrico Ferrero
- [BioC] Question about BiomartGeneRegionTrack
Tiphaine Martin
- [BioC] bumphunter DMRs difficulties
Giovanni Calice
- [BioC] bumphunter DMRs difficulties
Kasper Daniel Hansen
- [BioC] bumphunter DMRs difficulties
Giovanni Calice
- [BioC] Question about BiomartGeneRegionTrack
Hahne, Florian
- [BioC] bumphunter DMRs difficulties
James W. MacDonald
- [BioC] bumphunter DMRs difficulties
Giovanni Calice
- [BioC] bumphunter DMRs difficulties
James W. MacDonald
- [BioC] bumphunter DMRs difficulties
Giovanni Calice
- [BioC] no significant differences in gene expression-limma
Gordon K Smyth
- [BioC] Can't install Rgraphviz
Enrico Ferrero
- [BioC] bumphunter DMRs difficulties
Giovanni Calice
- [BioC] Coercion lumi/minfi objects
Marco Boks
- [BioC] Coercion lumi/minfi objects
Tim Triche, Jr.
- [BioC] Coercion lumi/minfi objects
Marco Boks
- [BioC] bumphunter DMRs difficulties
Tim Triche, Jr.
- [BioC] Coercion lumi/minfi objects
Marco Boks
- [BioC] Can't install Rgraphviz
Kasper Daniel Hansen
- [BioC] Bug in GSVA with methods other than default?
Jonathan Manning
- [BioC] bumphunter DMRs difficulties
Giovanni Calice
- [BioC] Bug in GSVA with methods other than default?
Robert Castelo
- [BioC] Gviz output extra empty page on pdf device
Hahne, Florian
- [BioC] Can't install Rgraphviz
Enrico Ferrero
- [BioC] Tigre Question
Solanki, Anisha
- [BioC] Tigre Question
Antti Honkela
- [BioC] DESeq2 - regularised log transformation blind or not?
Mike Stubbington
- [BioC] Gviz output extra empty page on pdf device
Dan Du
- [BioC] bumphunter DMRs difficulties
James W. MacDonald
- [BioC] DESeq2 - regularised log transformation blind or not?
Wolfgang Huber
- [BioC] Gviz output extra empty page on pdf device
Hahne, Florian
- [BioC] bumphunter DMRs difficulties
Kasper Daniel Hansen
- [BioC] Gviz: axes related parameters
Maxim
- [BioC] no significant differences in gene expression-limma
Sabet, Julia A
- [BioC] what should be the cutoff for detecting over expressing tumor samples when compared with normal samples?
ying chen
- [BioC] DESeq2 - regularised log transformation blind or not?
Mike Stubbington
- [BioC] DESeq2 - regularised log transformation blind or not?
Michael Love
- [BioC] Can't install Rgraphviz
Kasper Daniel Hansen
- [BioC] DESeq2 - regularised log transformation blind or not?
Wolfgang Huber
- [BioC] rtracklayer\'s browseGenome function failes when invoked according to vignette
Marcel Schilling [guest]
- [BioC] DESeq2 - regularised log transformation blind or not?
Mike Stubbington
- [BioC] DESeq2 - regularised log transformation blind or not?
Wolfgang Huber
- [BioC] fastest way to keep score when reduce Granges data
Ou, Jianhong
- [BioC] bumphunter DMRs difficulties
Giovanni Calice
- [BioC] OMIM - biomaRt?
Tim Smith
- [BioC] Can't install Rgraphviz
Enrico Ferrero
- [BioC] Candida albicans AnnotationData Package
Baharul [guest]
- [BioC] Candida albicans AnnotationData Package
James W. MacDonald
- [BioC] Gviz: axes related parameters
Steve Lianoglou
- [BioC] no significant differences in gene expression-limma
Steve Lianoglou
- [BioC] DMR identification: minfi speed, memory problems
Allegra Petti [guest]
- [BioC] Can't install Rgraphviz
Kasper Daniel Hansen
- [BioC] Gviz: axes related parameters
Maxim
- [BioC] DMR identification: minfi speed, memory problems
James W. MacDonald
- [BioC] DMR identification: minfi speed, memory problems
Allegra A. Petti
- [BioC] bioMart request failed
Alejandra Medina [guest]
- [BioC] bioMart request failed
Steffen Durinck
- [BioC] using rma() on XYS files using oligo package
James Yousin
- [BioC] Get eset from GLP
Jerry Cholo
- [BioC] methyAnalysis for DMR identification
Allegra Petti [guest]
- [BioC] Significance of overlapping GO terms?
Tim Smith
- [BioC] Low number of replicates DESeq
Federico Gaiti
- [BioC] Low number of replicates DESeq
Steve Lianoglou
- [BioC] DMR identification: minfi speed, memory problems
Kasper Daniel Hansen
- [BioC] using rma() on XYS files using oligo package
Benilton Carvalho
- [BioC] Low number of replicates DESeq
Federico Gaiti
- [BioC] Low number of replicates DESeq
Steve Lianoglou
- [BioC] Low number of replicates DESeq
Federico Gaiti
- [BioC] Gviz: axes related parameters
Dan Du
- [BioC] Gviz: axes related parameters
Maxim
- [BioC] Gviz: axes related parameters
James W. MacDonald
- [BioC] Low number of replicates DESeq
Michael Love
- [BioC] Can't install Rgraphviz
Kasper Daniel Hansen
- [BioC] methyAnalysis for DMR identification
Giovanni Calice
- [BioC] DMR identification: minfi speed, memory problems
Allegra Petti
- [BioC] TxDb file for Drerio (ie zebrafish)
Brodsky, Michael
- [BioC] DMR identification: minfi speed, memory problems
Kasper Daniel Hansen
- [BioC] DMR identification: minfi speed, memory problems
Allegra Petti
- [BioC] creating a qPCRset from Fluidigm 96*96 arrays in HTqPCR
Norm Allaire
- [BioC] creating a qPCRset from Fluidigm 96*96 arrays in HTqPCR
Kipper Fletez-Brant
- [BioC] methyAnalysis for DMR identification
Pan Du
- [BioC] methyAnalysis for DMR identification
Allegra A. Petti
- [BioC] methyAnalysis for DMR identification
Allegra A. Petti
- [BioC] methyAnalysis for DMR identification
Allegra Petti
- [BioC] parsing discrete colors in pathview KEGG
Simran Azariah
- [BioC] parsing discrete colors in pathview KEGG
Suleman Azariah
- [BioC] creating a qPCRset from Fluidigm 96*96 arrays in HTqPCR
Norm Allaire
- [BioC] TxDb file for Drerio (ie zebrafish)
James W. MacDonald
- [BioC] Low number of replicates DESeq
Federico Gaiti
- [BioC] Problem in limma-voom
Ming Yi
- [BioC] no significant differences in gene expression-limma
Gordon K Smyth
- [BioC] TxDb file for Drerio (ie zebrafish)
Hervé Pagès
- [BioC] no significant differences in gene expression-limma
Sabet, Julia A
- [BioC] no significant differences in gene expression-limma
Gordon K Smyth
- [BioC] methyAnalysis for DMR identification
Pan Du
- [BioC] DESeq2
Michael Love
- [BioC] Problem in limma-voom
Yunshun Chen
- [BioC] DESeq2
SSekar at tgen.org
- [BioC] fastest way to keep score when reduce Granges data
Hervé Pagès
- [BioC] Low number of replicates DESeq
Steve Lianoglou
- [BioC] Error in combining GRanges objects into GRangesList object
Kalyan K Pasumarthy
- [BioC] Low number of replicates DESeq
Federico Gaiti
- [BioC] Low number of replicates DESeq
Steve Lianoglou
- [BioC] Can't install Rgraphviz
Enrico Ferrero
- [BioC] get parameters of estimateLogicle
Samuel [guest]
- [BioC] Error in combining GRanges objects into GRangesList object
Michael Lawrence
- [BioC] limma fit interpretation doubt
David Moriña Soler
- [BioC] rtracklayer\'s browseGenome function failes when invoked according to vignette
Michael Lawrence
- [BioC] DESeq2 - regularised log transformation blind or not?
Michael Love
- [BioC] HTqPCR- gene names not maintained in limmaCtData
Cornwell, Adam
- [BioC] Reading in mutiple files using readCtData
Norm Allaire
- [BioC] Problem in limma-voom
Ming Yi
- [BioC] Reading in mutiple files using readCtData
James W. MacDonald
- [BioC] Reading in mutiple files using readCtData
Norm Allaire
- [BioC] DMRs
Giovanni Calice
- [BioC] limma fit interpretation doubt
James W. MacDonald
- [BioC] Reading in mutiple files using readCtData
James W. MacDonald
- [BioC] Reading in mutiple files using readCtData
Kipper Fletez-Brant
- [BioC] limma fit interpretation doubt
David Moriña Soler
- [BioC] Reading in mutiple files using readCtData
Norm Allaire
- [BioC] limma fit interpretation doubt
James W. MacDonald
- [BioC] methyAnalysis for DMR identification
Giovanni Calice
- [BioC] fastest way to keep score when reduce Granges data
Ou, Jianhong
- [BioC] Problem with NChannelSet objects using Agilent Data with arrayQualityMetrics package
Laurent.Pays
- [BioC] Can't install Rgraphviz
Kasper Daniel Hansen
- [BioC] WGCNA RNAseq
Anna Esteve Codina
- [BioC] Problem in limma-voom
Ming Yi
- [BioC] Can't install Rgraphviz
Enrico Ferrero
- [BioC] CRLMM Annotation file
Venu Pullabhatla
- [BioC] CRLMM Annotation file
James W. MacDonald
- [BioC] CRLMM Annotation file
Venu Pullabhatla
- [BioC] no significant differences in gene expression-limma
Sabet, Julia A
- [BioC] CRLMM Annotation file
James W. MacDonald
- [BioC] get parameters of estimateLogicle
Mike
- [BioC] Using Biomart other than Ensembl
Daniela Moré [guest]
- [BioC] Using Biomart other than Ensembl
James W. MacDonald
- [BioC] fastest way to keep score when reduce Granges data
Hervé Pagès
- [BioC] Problem in limma-voom
Ming Yi
- [BioC] get parameters of estimateLogicle
Samuel GRANJEAUD IR/INSERM
- [BioC] Using Biomart other than Ensembl
James W. MacDonald
- [BioC] Using Biomart other than Ensembl
Daniela Moré
- [BioC] Request for installation of software R2.13/Biconductor 2.8
Mayur Doke
- [BioC] fastest way to keep score when reduce Granges data
Ou, Jianhong
- [BioC] methyAnalysis for DMR identification
Allegra Petti
- [BioC] Is there an expected coefficient of variation for the hybridization probe intensities among technical replicates?
Thornton, Matthew
- [BioC] Problem in limma-voom
Yunshun Chen
- [BioC] Request for installation of software R2.13/Biconductor 2.8
Dan Tenenbaum
- [BioC] First time use of limma for two-color agilent array analysis
Calin-Jageman, Robert
- [BioC] Low number of replicates DESeq
Federico Gaiti
- [BioC] Repitools - featureScores - mappability Bsgenome object
Jaritz,Markus
- [BioC] Useful information about Ensembl release 75 mart databases
Thomas Maurel
- [BioC] pathview - plotting multiple samples in the same graph?
Peter Davidsen
- [BioC] Low number of replicates DESeq
Michael Love
- [BioC] First time use of limma for two-color agilent array analysis
James W. MacDonald
- [BioC] Is there an expected coefficient of variation for the hybridization probe intensities among technical replicates?
James W. MacDonald
- [BioC] Is there an expected coefficient of variation for the hybridization probe intensities among technical replicates?
James W. MacDonald
- [BioC] Low number of replicates DESeq
Simon Anders
- [BioC] getGEO
Jerry Cholo
- [BioC] Is there an expected coefficient of variation for the hybridization probe intensities among technical replicates?
cstrato
- [BioC] getGEO
Sean Davis
- [BioC] Problem with NChannelSet objects using Agilent Data with arrayQualityMetrics package
Wolfgang Huber
- [BioC] Problems with robustPca in pcaMethods
J Brown [guest]
- [BioC] pathview - plotting multiple samples in the same graph?
Luo Weijun
- [BioC] Power Calculation of multiple factors design of RNA-sequencing study
Yanzhu [guest]
- [BioC] no significant differences in gene expression-limma
Gordon K Smyth
- [BioC] Low number of replicates DESeq
Federico Gaiti
- [BioC] Low number of replicates DESeq
Michael Love
- [BioC] Low number of replicates DESeq
Federico Gaiti
- [BioC] CIGAR-aware coverage
chris warth
- [BioC] pileupAsGranges invalid times error
Katherine Yahvah
- [BioC] Problem in limma-voom
Ming Yi
- [BioC] Low number of replicates DESeq
Michael Love
- [BioC] Questiond about the descrepancy between edgeR and limma-voom
Ming Yi
- [BioC] Low number of replicates DESeq
Federico Gaiti
- [BioC] pileupAsGranges invalid times error
Michael Lawrence
- [BioC] CIGAR-aware coverage
Michael Lawrence
- [BioC] CIGAR-aware coverage
chris warth
- [BioC] CIGAR-aware coverage
Hervé Pagès
- [BioC] CIGAR-aware coverage
Hervé Pagès
- [BioC] CIGAR-aware coverage
Michael Lawrence
- [BioC] correlation analysis
Helen Smith
- [BioC] pileupAsGranges invalid times error
Michael Lawrence
- [BioC] Draft support for HTA 2.0 with oligo
Johann Pellet
- [BioC] correlation analysis
Steve Lianoglou
- [BioC] CIGAR-aware coverage
Hervé Pagès
- [BioC] DART
Martin Garbe [guest]
- [BioC] CIGAR-aware coverage
Michael Lawrence
- [BioC] Harvard Medical School Opening: Specialist, ETL, and Applicatoin Developer
Doe, Aimee
- [BioC] CIGAR-aware coverage
Hervé Pagès
- [BioC] Draft support for HTA 2.0 with oligo
Benilton Carvalho
- [BioC] Draft support for HTA 2.0 with oligo
James W. MacDonald
- [BioC] DART
Lawler, Katherine
Last message date:
Fri Feb 28 23:50:10 CET 2014
Archived on: Fri Feb 28 23:50:18 CET 2014
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