[BioC] DESeq2 - input data questions

[Steve Lianoglou]

Hi,

On Tue, Feb 11, 2014 at 7:11 AM, Ming Yi <yi02 at hotmail.com> wrote:
> Hi, Mike:
>
>
>
> Thanks a lot for the prompt response and input, which is very helpful
>
> Since some of the genes seem a bit interesting to us, and of course we love to keep.
>
> However, when I try:
>
>> resType <- results(dds, "Type_Tumor_vs_Normal",cooksCutoff=FALSE);
> Error in results(dds, "Type_Tumor_vs_Normal", cooksCutoff = FALSE) :
>   unused argument (cooksCutoff = FALSE)

What version of DESeq2 are you using?
Is the `cooksCutoff` not defined in the documentation when you fire`?results` ?

-steve

-- 
Steve Lianoglou
Computational Biologist
Genentech