[BioC] DEXSeq - too many exons in gene

Steve Lianoglou lianoglou.steve at gene.com
Thu Feb 6 18:56:53 CET 2014


Oh, and by the way:

On Thu, Feb 6, 2014 at 9:01 AM, António domingues
<amjdomingues at gmail.com> wrote:
> Hi Bioconductors,
>
> I happened upon a funny thing in DEXseq: a gene which appears to have more
> exons in the final DEXseq output than the annotation suggests. The gene
> ENSMUSG00000027854 (screen-shot from UCSC in attachment) suggests the 3
> exons in a flattened gene model.

I'd argue that the isoform of the gene that you highlighted in your
original screen shot only has *two* exons :-)

-steve

-- 
Steve Lianoglou
Computational Biologist
Genentech



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