[BioC] biogrid cytoscape plugin

[Paul Shannon]

Hi Helen,

May I ask what you are trying to do with the BioGrid plugin?

All BioGrid interactions are avaialable programmatically with the new Bioc PSICQUIC package.  Please describe (in some detail) what your goal is; we could then figure out if PSCICQUIC + RCytoscape will help.

 - Paul


On Feb 3, 2014, at 8:18 AM, Helen Smith wrote:

> Yes I have. I just thought it might be worth asking the bioconductor people as I know a large percentage of use can use both......
> Didn't mean to be a nuisance, just getting desperate.
> 
> Kind regards, 
> Helen
> 
> -----Original Message-----
> From: Dan Tenenbaum [mailto:dtenenba at fhcrc.org] 
> Sent: 03 February 2014 15:56
> To: Helen Smith
> Cc: bioconductor at r-project.org
> Subject: Re: [BioC] biogrid cytoscape plugin
> 
> This is not a Bioconductor question. You should find a cytoscape-oriented place to ask this question.
> Dan
> 
> 
> ----- Original Message -----
>> From: "Helen Smith" <helen.smith-2 at manchester.ac.uk>
>> To: bioconductor at r-project.org
>> Sent: Monday, February 3, 2014 7:22:01 AM
>> Subject: [BioC] biogrid cytoscape plugin
>> 
>> Hi All,
>> 
>> I'm having a nightmare uploading the cytoscape plugin 'BioGrid'
>> (version 2.2) into cytoscape (version 2.8.3).
>> I keep getting the error message: unable to install plugin:
>> java.langNullPointerException
>> I have the up-to date version of java and can't see what the problem 
>> is........
>> 
>> Anyone else have this problem? Any suggestions?
>> 
>> Thanks in advance,
>> Helen
>> 
>> 
>> 
>> Dr. Helen Smith PhD MSc BSc
>> Department of Reproductive Medicine,
>> The University of Manchester,
>> Oxford Road,
>> Manchester
>> 
>> 
>> 	[[alternative HTML version deleted]]
>> 
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