[BioC] BSgenomes pig

[Hervé Pagès]

Hi Csaba,

You didn't say which assembly/files you want this BSgenome package
to be based on. I just made one for susScr3 (latest assembly for
pig available at UCSC), hope that's OK:

   http://genome.ucsc.edu/cgi-bin/hgGateway?clade=mammal&org=Pig

I also made one for the masked genome. The 2 packages are:

   BSgenome.Sscrofa.UCSC.susScr3
   BSgenome.Sscrofa.UCSC.susScr3.masked

They'll become available via biocLite() for BioC devel users only
in a couple of hours. Only the source packages will be available for
now (but you should be able to install them on Windows or Mac with
biocLite("<pkgname>", type="source")).

Please let me know if you have any question or concern about this.

Cheers,
H.


On 02/05/2014 04:46 AM, Miskey, Csaba wrote:
> Dear Herve,
>
> I would like to kindly request the pig genome for the BSgenome package.
> I would appreciate your help.
>
> Best,
> Csaba
>
>
>
> 	[[alternative HTML version deleted]]
>
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-- 
Hervé Pagès

Program in Computational Biology
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