[BioC] mzR installation

[gtsiliki at bioacademy.gr]

Issue solved! Many thanks for your help!

Georgia

>
>
> ----- Original Message -----
>> From: "Dan Tenenbaum" <dtenenba at fhcrc.org>
>> To: "Dirk Eddelbuettel" <edd at debian.org>
>> Cc: "Kevin Ushey" <kevinushey at gmail.com>, bioconductor at r-project.org,
>> gtsiliki at bioacademy.gr
>> Sent: Monday, February 10, 2014 6:57:06 PM
>> Subject: Re: [BioC] mzR installation
>>
>>
>>
>> ----- Original Message -----
>> > From: "Dan Tenenbaum" <dtenenba at fhcrc.org>
>> > To: "Dirk Eddelbuettel" <edd at debian.org>
>> > Cc: "Kevin Ushey" <kevinushey at gmail.com>,
>> > bioconductor at r-project.org, gtsiliki at bioacademy.gr
>> > Sent: Monday, February 10, 2014 6:50:31 PM
>> > Subject: Re: [BioC] mzR installation
>> >
>> >
>> >
>> > ----- Original Message -----
>> > > From: "Dirk Eddelbuettel" <edd at debian.org>
>> > > To: "Dan Tenenbaum" <dtenenba at fhcrc.org>
>> > > Cc: gtsiliki at bioacademy.gr, bioconductor at r-project.org, "Dirk
>> > > Eddelbuettel" <edd at debian.org>, "Kevin Ushey"
>> > > <kevinushey at gmail.com>, "Steffen Neumann" <sneumann at ipb-halle.de>
>> > > Sent: Monday, February 10, 2014 6:36:56 PM
>> > > Subject: Re: [BioC] mzR installation
>> > >
>> > >
>> > > On 10 February 2014 at 10:21, Dan Tenenbaum wrote:
>> > > | What the error message is saying is that installing Rcpp 0.11.0
>> > > | is
>> > > | the way around this.
>> > > | Unfortunately, that's not all.
>> > > |
>> > > | The latest version of mzR is currently not available for Mac
>> > > | because of an issue in Rcpp which needs to be
>> > > | fixed. Looks like it has been fixed in Github but not yet
>> > > | propagated to CRAN. So as soon as you see a version of Rcpp
>> > > | higher
>> > > | than 0.11.0 on
>> > > | this page:
>> > > |
>> > > | http://cran.r-project.org/web/packages/Rcpp/index.html
>> > > |
>> > > | ...try again.
>> > >
>> > > Or just install Rcpp from it current (and *very stable*) source
>> > > repository:
>> > > https://github.com/RcppCore/Rcpp
>> > >
>> >
>> > You can also do this:
>> >
>> > source("http://bioconductor.org/biocLite.R")
>> > biocLite("mzR", type="source")
>> >
>> > But this (and the github url that Dirk suggests) requires that you
>> > have the appropriate compilers installed, which on Mac requires
>> > that
>> > you install Xcode and its "command line tools" package.
>> >
>>
>> And you may also need the clang compiler (since Rcpp won't compile
>> with the version of g++ that is available by default on Mac OS X).
>> I'm working with Dirk and Kevin to get a patched version out so you
>> don't need to do all this.
>>
>
>
> A new version of mzR (1.8.1.1) is now available via:
> source("http://bioconductor.org/biocLite.R")
> biocLite("mzR")
>
> This does not require any special tools to be installed. Sorry for the
> inconvenience. Let me know if you continue to have issues.
>
> Dan
>
>
>
>> Thanks,
>> Dan
>>
>>
>> > Dan
>> >
>> >
>> > > Dirk
>> > >
>> > > --
>> > > Dirk Eddelbuettel | edd at debian.org | http://dirk.eddelbuettel.com
>> > >
>> >
>> > _______________________________________________
>> > Bioconductor mailing list
>> > Bioconductor at r-project.org
>> > https://stat.ethz.ch/mailman/listinfo/bioconductor
>> > Search the archives:
>> > http://news.gmane.org/gmane.science.biology.informatics.conductor
>> >
>>
>> _______________________________________________
>> Bioconductor mailing list
>> Bioconductor at r-project.org
>> https://stat.ethz.ch/mailman/listinfo/bioconductor
>> Search the archives:
>> http://news.gmane.org/gmane.science.biology.informatics.conductor
>>
>