[BioC] Updating issues

[Julian Gehring]

Hi Kyle,

DESeq2 1.3.35 is part of the current developer branch of bioc (2.14) 
[http://bioconductor.org/packages/devel/bioc/html/DESeq2.html], while 
the DESeq2 1.2.9 is part of the stable release (bioc 2.13).  If you want 
to use DESeq2 1.3.35, you should consider upgrading your bioc 
installation to the developer branch: 
http://www.bioconductor.org/developers/how-to/useDevel/

Best wishes
Julian


On 02/03/2014 07:59 AM, Kyle Lambert [guest] wrote:
>
> I have been investigating how to update DESeq2 to version 1.3.35. When I entered:
>> source("http://bioconductor.org/biocLite.R")
>> biocLite("DESeq2")
> My DESeq2 updated to 1.2.9.
> I read that in order to get 1.3.35 bioconductor has to be updated from 2.13 to 2.14. However, it seems the current release of bioconductor is 2.13, and 2.14 is still being developed. Is Bioconductor version 2.14 unavailable for use right now? And is my information correct or is there a way to update DESeq2 to version 1.3.35?
>
>   -- output of sessionInfo():
>
>> sessionInfo()
> R version 3.0.2 (2013-09-25)
> Platform: x86_64-w64-mingw32/x64 (64-bit)
>
> locale:
> [1] LC_COLLATE=English_United States.1252  LC_CTYPE=English_United States.1252
> [3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C
> [5] LC_TIME=English_United States.1252
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
> loaded via a namespace (and not attached):
> [1] tools_3.0.2
>
> --
> Sent via the guest posting facility at bioconductor.org.
>
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