[BioC] mzR install requires deprecated header file

[Dan Tenenbaum]

----- Original Message -----
> From: "James W. MacDonald" <jmacdon at uw.edu>
> To: "Rob [guest]" <guest at bioconductor.org>
> Cc: 2robsmith at gmail.com, bioconductor at r-project.org
> Sent: Monday, February 10, 2014 10:22:18 AM
> Subject: Re: [BioC] mzR install requires deprecated header file
> 
> Hi Rob,
> 
> mzR-1.9.4 is a devel version, so you need to first install a release
> candidate version of R, and then run biocLite() to install.
> 
> http://cran.r-project.org/src/base-prerelease/
> 
> Best,
> 
> Jim
> 


There is now a patched version of mzR available so you do not need to install R and bioc/devel.
If you want you can go back to the release version of R and do this:

source("http://bioconductor.org/biocLite.R")
biocLite("mzR")

Dan


> 
> 
> On Monday, February 10, 2014 12:57:01 PM, Rob [guest] wrote:
> >
> > Hi,
> >
> > I am currently trying to install mzR in R 3.02. I am getting this
> > error:
> >
> > pwiz/utility/misc/sha1calc.cpp:29:36: fatal error:
> > Rcpp/iostream/Rostream.h: No such file or directory
> >   #include <Rcpp/iostream/Rostream.h>
> >
> > I saw this link:
> > http://permalink.gmane.org/gmane.comp.lang.r.rcpp/6676
> >
> > that suggests this is a known issue and fixed in mzR-1.9.4.
> >
> > I'm not terribly familiar with R. How can I install this specific,
> > updated version of mzR? Right now I am using biocLite("mzR").
> >
> > Many thanks!
> > Rob
> >
> >   -- output of sessionInfo():
> >
> > na
> >
> > --
> > Sent via the guest posting facility at bioconductor.org.
> >
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> 
> --
> James W. MacDonald, M.S.
> Biostatistician
> University of Washington
> Environmental and Occupational Health Sciences
> 4225 Roosevelt Way NE, # 100
> Seattle WA 98105-6099
> 
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