April 2014 Archives by thread

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Starting: Tue Apr 1 07:23:01 CEST 2014
Ending: Wed Apr 30 23:41:01 CEST 2014
Messages: 208

• [Bioc-devel] svn repository for data experiment packages now having branches too   Hervé Pagès
  • [Bioc-devel] svn repository for data experiment packages now having branches too   Laurent Gatto
    • [Bioc-devel] svn repository for data experiment packages now having branches too   Bernd Fischer
• [Bioc-devel] beadarray warning (seqlevelsStyle?)   Mark Dunning
  • [Bioc-devel] beadarray warning (seqlevelsStyle?)   Martin Rijlaarsdam
    • [Bioc-devel] beadarray warning (seqlevelsStyle?)   Sonali Arora
  • [Bioc-devel] beadarray warning (seqlevelsStyle?)   Sonali Arora
• [Bioc-devel] Subsetting Lists by Lists   Michael Lawrence
  • [Bioc-devel] Subsetting Lists by Lists   Cook, Malcolm
    • [Bioc-devel] Subsetting Lists by Lists   Ryan
      • [Bioc-devel] Subsetting Lists by Lists   Hervé Pagès
      • [Bioc-devel] Subsetting Lists by Lists   Michael Lawrence
      • [Bioc-devel] Subsetting Lists by Lists   Hervé Pagès
      • [Bioc-devel] Subsetting Lists by Lists   Michael Lawrence
      • [Bioc-devel] Subsetting Lists by Lists   Hervé Pagès
  • [Bioc-devel] Subsetting Lists by Lists   Tim Triche, Jr.
    • [Bioc-devel] Subsetting Lists by Lists   Hervé Pagès
      • [Bioc-devel] Subsetting Lists by Lists   Tim Triche, Jr.
    • [Bioc-devel] Subsetting Lists by Lists   Hervé Pagès
  • [Bioc-devel] Subsetting Lists by Lists   Hervé Pagès
• [Bioc-devel] Bioconductor newsletter: April 2014   Valerie Obenchain
  • [Bioc-devel] Bioconductor newsletter: April 2014   Cook, Malcolm
    • [Bioc-devel] Bioconductor newsletter: April 2014   Valerie Obenchain
• [Bioc-devel] BiocCheck: Allowed formats for vignette source   Julian Gehring
  • [Bioc-devel] BiocCheck: Allowed formats for vignette source   Dan Tenenbaum
• [Bioc-devel] [Rd] Conflicting definitions for function redefined as S4 generics   Ulrich Bodenhofer
  • [Bioc-devel] [Rd] Conflicting definitions for function redefined as S4 generics   Michael Lawrence
• [Bioc-devel] A question on IRanges package   Yuan Luo
  • [Bioc-devel] A question on IRanges package   Michael Lawrence
    • [Bioc-devel] A question on IRanges package   Yuan Luo
      • [Bioc-devel] A question on IRanges package   Michael Lawrence
      • [Bioc-devel] A question on IRanges package   Yuan Luo
      • [Bioc-devel] A question on IRanges package   Michael Lawrence
      • [Bioc-devel] A question on IRanges package   Martin Morgan
      • [Bioc-devel] A question on IRanges package   Yuan Luo
      • [Bioc-devel] A question on IRanges package   Yuan Luo
      • [Bioc-devel] A question on IRanges package   Gabe Becker
      • [Bioc-devel] A question on IRanges package   Martin Morgan
• [Bioc-devel] renameSeqlevels name matching   Michael Lawrence
  • [Bioc-devel] renameSeqlevels name matching   Sonali Arora
    • [Bioc-devel] renameSeqlevels name matching   Michael Lawrence
• [Bioc-devel] preservation of names by translate,DNAStringSet   Michael Lawrence
  • [Bioc-devel] preservation of names by translate,DNAStringSet   Hervé Pagès
• [Bioc-devel] Bioconductor packages for R-3.1.0 beta on OSX 10.9   Diego Diez
  • [Bioc-devel] Bioconductor packages for R-3.1.0 beta on OSX 10.9   Dan Tenenbaum
    • [Bioc-devel] Bioconductor packages for R-3.1.0 beta on OSX 10.9   Diego Diez
      • [Bioc-devel] Bioconductor packages for R-3.1.0 beta on OSX 10.9   Dan Tenenbaum
• [Bioc-devel] Bioconductor support for R-3.1.0 on Mavericks (Mac OS X 10.9)   Dan Tenenbaum
• [Bioc-devel] unexpected build and check error   Luo Weijun
  • [Bioc-devel] unexpected build and check error   Martin Morgan
    • [Bioc-devel] unexpected build and check error   Luo Weijun
      • [Bioc-devel] unexpected build and check error   Dan Tenenbaum
      • [Bioc-devel] unexpected build and check error   Luo Weijun
• [Bioc-devel] rownames in SummerizedExperiments   Simon Anders
  • [Bioc-devel] rownames in SummerizedExperiments   Simon Anders
    • [Bioc-devel] rownames in SummerizedExperiments   Michael Lawrence
      • [Bioc-devel] rownames in SummerizedExperiments   Simon Anders
      • [Bioc-devel] rownames in SummerizedExperiments   Michael Lawrence
      • [Bioc-devel] rownames in SummerizedExperiments   Martin Morgan
      • [Bioc-devel] rownames in SummerizedExperiments   Michael Lawrence
      • [Bioc-devel] rownames in SummerizedExperiments   Simon Anders
      • [Bioc-devel] rownames in SummerizedExperiments   Hervé Pagès
• [Bioc-devel] git-svn bridge down?   Julian Gehring
  • [Bioc-devel] git-svn bridge down?   Dan Tenenbaum
    • [Bioc-devel] git-svn bridge down?   Julian Gehring
      • [Bioc-devel] git-svn bridge down?   Dan Tenenbaum
      • [Bioc-devel] git-svn bridge down?   Julian Gehring
      • [Bioc-devel] git-svn bridge down?   Julian Gehring
      • [Bioc-devel] git-svn bridge down?   Steffen Neumann
      • [Bioc-devel] git-svn bridge down?   Dan Tenenbaum
      • [Bioc-devel] git-svn bridge down?   Dan Tenenbaum
      • [Bioc-devel] git-svn bridge down?   Dan Tenenbaum
      • [Bioc-devel] git-svn bridge down?   Dan Tenenbaum
• [Bioc-devel] Preparing package release notes   Dan Tenenbaum
• [Bioc-devel] No propagation from the GitHub bridge (clonotypeR package).   Charles Plessy
• [Bioc-devel] "[[<-" method dispatch and GenomicRanges   Michael Stadler
  • [Bioc-devel] "[[<-" method dispatch and GenomicRanges   Vincent Carey
  • [Bioc-devel] "[[<-" method dispatch and GenomicRanges   Hervé Pagès
    • [Bioc-devel] "[[<-" method dispatch and GenomicRanges   Michael Stadler
• [Bioc-devel] Commit Problem   Morganella Sandro
  • [Bioc-devel] Commit Problem   Dan Du
• [Bioc-devel] restrictToSNV for VCF   Valerie Obenchain
• [Bioc-devel] compare generics   Laurent Gatto
  • [Bioc-devel] compare generics   Hervé Pagès
    • [Bioc-devel] compare generics   Laurent Gatto
• [Bioc-devel] Old version of packages   Gustavo H. Esteves
  • [Bioc-devel] Old version of packages   Dan Tenenbaum
    • [Bioc-devel] Old version of packages   Gustavo H. Esteves
• [Bioc-devel] metadata() in BiocGenerics?   Vincent Carey
  • [Bioc-devel] metadata() in BiocGenerics?   Hervé Pagès
    • [Bioc-devel] metadata() in BiocGenerics?   Vincent Carey
      • [Bioc-devel] metadata() in BiocGenerics?   Hervé Pagès
    • [Bioc-devel] metadata() in BiocGenerics?   Michael Lawrence
• [Bioc-devel] Dependency on windowing systems in the flowCore package   Kieran O'Neill
  • [Bioc-devel] Dependency on windowing systems in the flowCore package   Dan Tenenbaum
    • [Bioc-devel] Dependency on windowing systems in the flowCore package   Kieran O'Neill
      • [Bioc-devel] Dependency on windowing systems in the flowCore package   Kevin Ushey
      • [Bioc-devel] Dependency on windowing systems in the flowCore package   Kasper Daniel Hansen
      • [Bioc-devel] Dependency on windowing systems in the flowCore package   Kevin Ushey
      • [Bioc-devel] Dependency on windowing systems in the flowCore package   Kieran O'Neill
  • [Bioc-devel] Dependency on windowing systems in the flowCore package   Mike
    • [Bioc-devel] Dependency on windowing systems in the flowCore package   Mike
    • [Bioc-devel] Dependency on windowing systems in the flowCore package   Martin Morgan
      • [Bioc-devel] Dependency on windowing systems in the flowCore package   Mike
      • [Bioc-devel] Dependency on windowing systems in the flowCore package   Kieran O'Neill
      • [Bioc-devel] Dependency on windowing systems in the flowCore package   Mike
  • [Bioc-devel] Dependency on windowing systems in the flowCore package   Josef Spidlen
• [Bioc-devel] seqlevelsStyle<- doesn't work for GRanges object   Tengfei Yin
  • [Bioc-devel] seqlevelsStyle<- doesn't work for GRanges object   Tengfei Yin
  • [Bioc-devel] seqlevelsStyle<- doesn't work for GRanges object   Hervé Pagès
    • [Bioc-devel] seqlevelsStyle<- doesn't work for GRanges object   Tengfei Yin
• [Bioc-devel] Restrictions on findOverlaps parameters with SummarizedExperiment objects   Peter Hickey
  • [Bioc-devel] Restrictions on findOverlaps parameters with SummarizedExperiment objects   Martin Morgan
    • [Bioc-devel] Restrictions on findOverlaps parameters with SummarizedExperiment objects   Peter Hickey
• [Bioc-devel] Important: Bioconductor 2.14 branch to be created today   Dan Tenenbaum
  • [Bioc-devel] Important: Bioconductor 2.14 branch to be created today   Dan Tenenbaum
• [Bioc-devel] BioC 2.14 branch created   Dan Tenenbaum
• [Bioc-devel] Bioconductor 2.14 is released   Dan Tenenbaum
• [Bioc-devel] biocLite “no packages in repository” error   Dan Tenenbaum
  • [Bioc-devel] biocLite “no packages in repository” error   Dan Tenenbaum
    • [Bioc-devel] biocLite “no packages in repository” error   Nicolas Delhomme
      • [Bioc-devel] biocLite “no packages in repository” error   Dan Tenenbaum
      • [Bioc-devel] biocLite “no packages in repository” error   Nicolas Delhomme
• [Bioc-devel] [BioC] Can\'t load new BioC packages   Nicolas Delhomme
  • [Bioc-devel] [BioC] Can\'t load new BioC packages   Dan Tenenbaum
• [Bioc-devel] Packaging a medium/large project   ushi
  • [Bioc-devel] Packaging a medium/large project   Julian Gehring
    • [Bioc-devel] Packaging a medium/large project   Julian Gehring
      • [Bioc-devel] Packaging a medium/large project   Gabe Becker
• [Bioc-devel] [devteam-bioc] suggestion about bioconductor package-- BSgenome.Hsapiens.NCBI.GRCh38   Hervé Pagès
  • [Bioc-devel] [devteam-bioc] suggestion about bioconductor package-- BSgenome.Hsapiens.NCBI.GRCh38   Michael Lawrence
    • [Bioc-devel] [devteam-bioc] suggestion about bioconductor package-- BSgenome.Hsapiens.NCBI.GRCh38   Hervé Pagès
      • [Bioc-devel] [devteam-bioc] suggestion about bioconductor package-- BSgenome.Hsapiens.NCBI.GRCh38   Michael Lawrence
    • [Bioc-devel] Fwd: Re: [devteam-bioc] suggestion about bioconductorpackage-- BSgenome.Hsapiens.NCBI.GRCh38   Michael Lawrence
      • [Bioc-devel] Fwd: Re: [devteam-bioc] suggestion about bioconductorpackage-- BSgenome.Hsapiens.NCBI.GRCh38   Hervé Pagès
      • [Bioc-devel] Fwd: Re: [devteam-bioc] suggestion about bioconductorpackage-- BSgenome.Hsapiens.NCBI.GRCh38   Martin Morgan
      • [Bioc-devel] Fwd: Re: [devteam-bioc] suggestion about bioconductorpackage-- BSgenome.Hsapiens.NCBI.GRCh38   Martin Morgan
      • [Bioc-devel] Fwd: Re: [devteam-bioc] suggestion about bioconductorpackage-- BSgenome.Hsapiens.NCBI.GRCh38   Tim Triche, Jr.
      • [Bioc-devel] Fwd: Re: [devteam-bioc] suggestion about bioconductorpackage-- BSgenome.Hsapiens.NCBI.GRCh38   Hervé Pagès
      • [Bioc-devel] Fwd: Re: [devteam-bioc] suggestion about bioconductorpackage-- BSgenome.Hsapiens.NCBI.GRCh38   Tim Triche, Jr.
• [Bioc-devel] BiocUpgrades updates to devel instead of stable   Julian Gehring
  • [Bioc-devel] BiocUpgrades updates to devel instead of stable   Steve Lianoglou
    • [Bioc-devel] BiocUpgrades updates to devel instead of stable   Julian Gehring
      • [Bioc-devel] BiocUpgrades updates to devel instead of stable   Julian Gehring
      • [Bioc-devel] BiocUpgrades updates to devel instead of stable   Martin Morgan
• [Bioc-devel] S4Vectors package   Hervé Pagès
• [Bioc-devel] Apparent error in illuminaHumanv4.db   Taku Tokuyasu
• [Bioc-devel] strange spam from biocbuild   Marc Carlson
• [Bioc-devel] New package version and BiocCheck   Dan Gatti
  • [Bioc-devel] New package version and BiocCheck   Dan Tenenbaum
  • [Bioc-devel] New package version and BiocCheck   Dan Tenenbaum
    • [Bioc-devel] 'memory not mapped' in trimLRpatterns   Michael Stadler
      • [Bioc-devel] 'memory not mapped' in trimLRpatterns   Hervé Pagès
• [Bioc-devel] Rsamtools: Is extdata/ex1.bam.bai outdated?   Henrik Bengtsson
  • [Bioc-devel] Rsamtools: Is extdata/ex1.bam.bai outdated?   Martin Morgan
    • [Bioc-devel] Rsamtools: Is extdata/ex1.bam.bai outdated?   Henrik Bengtsson
• [Bioc-devel] Rsamtools applyPileups function not merging positions from multiple files if not identical   Jonathon Hill
  • [Bioc-devel] Rsamtools applyPileups function not merging positions from multiple files if not identical   Martin Morgan
    • [Bioc-devel] Rsamtools applyPileups function not merging positions from multiple files if not identical   Jonathon Hill
      • [Bioc-devel] Rsamtools applyPileups function not merging positions from multiple files if not identical   Martin Morgan
      • [Bioc-devel] Rsamtools applyPileups function not merging positions from multiple files if not identical   Jonathon Hill
      • [Bioc-devel] Rsamtools applyPileups function not merging positions from multiple files if not identical   Martin Morgan
• [Bioc-devel] r+w permissions in release branches   Alejandro Reyes
  • [Bioc-devel] r+w permissions in release branches   Kasper Daniel Hansen
    • [Bioc-devel] r+w permissions in release branches   Andrzej Oleś
      • [Bioc-devel] r+w permissions in release branches   Alejandro Reyes
      • [Bioc-devel] r+w permissions in release branches   Julian Gehring
      • [Bioc-devel] r+w permissions in release branches   Wolfgang Huber
      • [Bioc-devel] r+w permissions in release branches   Julian Gehring
      • [Bioc-devel] r+w permissions in release branches   Kasper Daniel Hansen
      • [Bioc-devel] r+w permissions in release branches   Martin Morgan
      • [Bioc-devel] r+w permissions in release branches   Wolfgang Huber
      • [Bioc-devel] r+w permissions in release branches   Kasper Daniel Hansen
      • [Bioc-devel] r+w permissions in release branches   Wolfgang Huber
      • [Bioc-devel] r+w permissions in release branches   Steve Lianoglou
      • [Bioc-devel] r+w permissions in release branches   Hervé Pagès
• [Bioc-devel] Package vignette and knitr   davide risso
  • [Bioc-devel] Package vignette and knitr   Dan Tenenbaum
    • [Bioc-devel] Package vignette and knitr   davide risso
• [Bioc-devel] Lazy evaluation and S4 methods   Kevin Ushey
  • [Bioc-devel] Lazy evaluation and S4 methods   Michael Lawrence
    • [Bioc-devel] Lazy evaluation and S4 methods   Kevin Ushey
      • [Bioc-devel] Lazy evaluation and S4 methods   Michael Lawrence
      • [Bioc-devel] Lazy evaluation and S4 methods   Kevin Ushey
• [Bioc-devel] IRanges:::safeExplode   Tengfei Yin
  • [Bioc-devel] IRanges:::safeExplode   Hervé Pagès
    • [Bioc-devel] IRanges:::safeExplode   Tengfei Yin
• [Bioc-devel] error in summary method for KEGGHyperGResult   Gabe Becker
  • [Bioc-devel] error in summary method for KEGGHyperGResult   James W. MacDonald
    • [Bioc-devel] error in summary method for KEGGHyperGResult   Gabriel Becker
• [Bioc-devel] git svn bridge is broken   Mike
  • [Bioc-devel] git svn bridge is broken   Dan Tenenbaum
• [Bioc-devel] CITATION on the Bioc package landing page?   Wolfgang Huber
  • [Bioc-devel] CITATION on the Bioc package landing page?   Vincent Carey
    • [Bioc-devel] CITATION on the Bioc package landing page?   Michael Lawrence
      • [Bioc-devel] CITATION on the Bioc package landing page?   Martin Morgan
• [Bioc-devel] Missing seqinfo method for BamFileList?   Ryan C. Thompson
  • [Bioc-devel] Missing seqinfo method for BamFileList?   Martin Morgan
    • [Bioc-devel] Missing seqinfo method for BamFileList?   Ryan Thompson
• [Bioc-devel] Bug in as.data.frame method for RangedData?   Kevin Ushey
  • [Bioc-devel] Bug in as.data.frame method for RangedData?   Valerie Obenchain
• [Bioc-devel] rbind,DataFrame vs rbind.data.frame   Hervé Pagès
  • [Bioc-devel] rbind,DataFrame vs rbind.data.frame   Michael Lawrence
    • [Bioc-devel] rbind,DataFrame vs rbind.data.frame   Hervé Pagès
• [Bioc-devel] Gviz AnnotationTrack ylim patch   Lance Parsons
• [Bioc-devel] Additional summarizeOverlaps counting modes for ChIP-Seq   Ryan C. Thompson
  • [Bioc-devel] Additional summarizeOverlaps counting modes for ChIP-Seq   Valerie Obenchain
    • [Bioc-devel] Additional summarizeOverlaps counting modes for ChIP-Seq   Ryan C. Thompson

Last message date: Wed Apr 30 23:41:01 CEST 2014
Archived on: Wed Apr 30 23:42:14 CEST 2014

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