[Bioc-devel] [BioC] Can\'t load new BioC packages

[Dan Tenenbaum]

Considering it. ;) Thanks.
Dan


----- Original Message -----
> From: "Nicolas Delhomme" <nicolas.delhomme at umu.se>
> To: "Dan Tenenbaum" <dtenenba at fhcrc.org>
> Cc: "David Lapointe [guest]" <guest at bioconductor.org>, "david lapointe" <david.lapointe at tufts.edu>,
> bioc-devel at r-project.org
> Sent: Tuesday, April 15, 2014 7:46:06 AM
> Subject: Re: [BioC] Can\'t load new BioC packages
> 
> Hej Dan!
> 
> You might get that question a lot in the next days, maverick is
> pretty popular :-). Could you add a temporary check in Bioclite()
> for the OS and report a more appropriate error message if it is
> running OSX maverick? I bet this is going to save you some email
> traffic ;-) Otherwise we can also take turn to answer them :-)
> 
> Nico
> 
> ---------------------------------------------------------------
> Nicolas Delhomme
> 
> The Street Lab
> Department of Plant Physiology
> Umeå Plant Science Center
> 
> Tel: +46 90 786 7989
> Email: nicolas.delhomme at umu.se
> SLU - Umeå universitet
> Umeå S-901 87 Sweden
> ---------------------------------------------------------------
> 
> On 15 Apr 2014, at 16:29, Dan Tenenbaum <dtenenba at fhcrc.org> wrote:
> 
> > Hi David,
> > 
> > You need to use the Snow Leopard version of R instead of the
> > Mavericks version, see
> > 
> > https://stat.ethz.ch/pipermail/bioc-devel/2014-April/005497.html
> > 
> > for more information.
> > 
> > Dan
> > 
> > 
> > ----- Original Message -----
> >> From: "David Lapointe [guest]" <guest at bioconductor.org>
> >> To: bioconductor at r-project.org, "david lapointe"
> >> <david.lapointe at tufts.edu>
> >> Sent: Tuesday, April 15, 2014 7:16:16 AM
> >> Subject: [BioC] Can\'t load new BioC packages
> >> 
> >> 
> >> The new packages don't seem to be available.  This is a confusing
> >> message since I do have an internet connection and
> >> bioconductor,org
> >> is available and up.
> >> 
> >> David
> >>> source("http://bioconductor.org/biocLite.R")
> >> Bioconductor version 2.14 (BiocInstaller 1.14.1), ?biocLite for
> >> help
> >>> biocLite()
> >> Error: 'no packages in repository (no internet connection?)' while
> >> trying
> >>  http://bioconductor.org/packages/2.14/bioc
> >> 
> >> 
> >> -- output of sessionInfo():
> >> 
> >>> sessionInfo()
> >> R version 3.1.0 (2014-04-10)
> >> Platform: x86_64-apple-darwin13.1.0 (64-bit)
> >> 
> >> locale:
> >> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
> >> 
> >> attached base packages:
> >> [1] stats     graphics  grDevices utils     datasets  methods
> >> [7] base
> >> 
> >> other attached packages:
> >> [1] BiocInstaller_1.14.1
> >> 
> >> loaded via a namespace (and not attached):
> >> [1] tools_3.1.0
> >> 
> >> --
> >> Sent via the guest posting facility at bioconductor.org.
> >> 
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> >> 
> > 
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>