[Bioc-devel] biocLite “no packages in repository” error

[Nicolas Delhomme]

Hej Dan!

With regards to this, do you have any timeline - since you got Maverick machines now :-) - as to when Maverick will be supported? 

As a feedback, compiling R and installing from source on Maverick has been fairly stable for me - just recently encountered a problem with compiling mzR but got a workaround from the package developers - and this since Maverick is out (October last year).

Cheers,

Nico

---------------------------------------------------------------
Nicolas Delhomme

The Street Lab
Department of Plant Physiology
Umeå Plant Science Center

Tel: +46 90 786 7989
Email: nicolas.delhomme at umu.se
SLU - Umeå universitet
Umeå S-901 87 Sweden
---------------------------------------------------------------

On 15 Apr 2014, at 16:28, Dan Tenenbaum <dtenenba at fhcrc.org> wrote:

> Never mind,
> 
> The problem is that you are using the Mavericks build which is not yet supported. Please use the Snow Leopard build of R.
> 
> See this link for more information:
> 
> https://stat.ethz.ch/pipermail/bioc-devel/2014-April/005497.html
> 
> Dan
> 
> 
> ----- Original Message -----
>> From: "Dan Tenenbaum" <dtenenba at fhcrc.org>
>> To: "Ashley Ng" <ang at wehi.EDU.AU>
>> Cc: bioc-devel at r-project.org
>> Sent: Tuesday, April 15, 2014 7:26:11 AM
>> Subject: Re: biocLite “no packages in repository” error
>> 
>> Hi Ashley,
>> 
>> ----- Original Message -----
>>> From: "Ashley Ng" <ang at wehi.EDU.AU>
>>> To: dtenenba at fhcrc.org
>>> Cc: bioc-devel at r-project.org
>>> Sent: Tuesday, April 15, 2014 3:04:23 AM
>>> Subject: biocLite “no packages in repository” error
>>> 
>>> Hi Dan
>>> 
>>> I seem to getting a “no packages in repository” biocLite error
>>> after
>>> installing R 3.10 and trying to upgrade packages:
>>> 
>>>> source("http://bioconductor.org/biocLite.R")
>>> Bioconductor version 2.14 (BiocInstaller 1.13.3), ?biocLite for
>>> help
>>>> biocLite()
>>> Error: 'no packages in repository (no internet connection?)' while
>>> trying
>>>  http://bioconductor.org/packages/2.14/bioc
>>> 
>>>> sessionInfo()
>>> R version 3.1.0 (2014-04-10)
>>> Platform: x86_64-apple-darwin13.1.0 (64-bit)
>>> 
>>> locale:
>>> [1] en_AU.UTF-8/en_AU.UTF-8/en_AU.UTF-8/C/en_AU.UTF-8/en_AU.UTF-8
>>> 
>>> attached base packages:
>>> [1] stats     graphics  grDevices utils     datasets  methods
>>>  base
>>> 
>>> other attached packages:
>>> [1] BiocInstaller_1.13.3
>>> 
>>> loaded via a namespace (and not attached):
>>> [1] tools_3.1.0
>>>> 
>>> 
>> 
>> What is the result of the following command:
>> 
>> library(BiocInstaller)
>> biocinstallRepos()
>> 
>> 
>> ?
>> 
>> Dan
>> 
>> 
>> 
>>> Cheers
>>> 
>>> Ashley Ng
>>> 
>>> Clinical Haematologist and Post Doctoral Fellow
>>> The Royal Melbourne Hospital
>>> The Walter and Eliza Hall Institute of Medical Research, Cancer and
>>> Haematology Division
>>> 1G Royal Parade
>>> Parkville, 3050
>>> Melbourne, Australia
>>> 
>>> 
>>> 
>>> ______________________________________________________________________
>>> The information in this email is confidential and intended solely
>>> for
>>> the addressee.
>>> You must not disclose, forward, print or use it without the
>>> permission of the sender.
>>> ______________________________________________________________________
>>> 
>> 
> 
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