[Bioc-devel] BiocUpgrades updates to devel instead of stable

[Steve Lianoglou]

HI,

On Thu, Apr 17, 2014 at 7:09 AM, Julian Gehring <julian.gehring at embl.de> wrote:
> Hi,
>
> When I run
>
>   source("http://bioconductor.org/biocLite.R")
>   biocLite("BiocUpgrade")
>
> on a stable R-3.1.0 with bioc 2.14 already installed, bioc wants to
> upgrade to bioc 3.0 (devel):
>
>   Bioconductor version 2.14 (BiocInstaller 1.14.1), ?biocLite for help
>   Upgrade all packages to Bioconductor version 3.0? [y/n]
>
> Is this intentional?  The documentation on the website and ?BiocUpgrade
> suggests that it upgrades to the latest bioc 'release'.

Is this some potential weirdness with ?BiocInstaller::useDevel maybe?

-steve

-- 
Steve Lianoglou
Computational Biologist
Genentech