[Bioc-devel] biocLite “no packages in repository” error

[Dan Tenenbaum]

Hi Ashley,

----- Original Message -----
> From: "Ashley Ng" <ang at wehi.EDU.AU>
> To: dtenenba at fhcrc.org
> Cc: bioc-devel at r-project.org
> Sent: Tuesday, April 15, 2014 3:04:23 AM
> Subject: biocLite “no packages in repository” error
> 
> Hi Dan
> 
> I seem to getting a “no packages in repository” biocLite error after
> installing R 3.10 and trying to upgrade packages:
> 
> > source("http://bioconductor.org/biocLite.R")
> Bioconductor version 2.14 (BiocInstaller 1.13.3), ?biocLite for help
> > biocLite()
> Error: 'no packages in repository (no internet connection?)' while
> trying
>   http://bioconductor.org/packages/2.14/bioc
> 
> > sessionInfo()
> R version 3.1.0 (2014-04-10)
> Platform: x86_64-apple-darwin13.1.0 (64-bit)
> 
> locale:
> [1] en_AU.UTF-8/en_AU.UTF-8/en_AU.UTF-8/C/en_AU.UTF-8/en_AU.UTF-8
> 
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
> 
> other attached packages:
> [1] BiocInstaller_1.13.3
> 
> loaded via a namespace (and not attached):
> [1] tools_3.1.0
> > 
> 

What is the result of the following command:

library(BiocInstaller)
biocinstallRepos()


?

Dan



> Cheers
> 
> Ashley Ng
> 
> Clinical Haematologist and Post Doctoral Fellow
> The Royal Melbourne Hospital
> The Walter and Eliza Hall Institute of Medical Research, Cancer and
> Haematology Division
> 1G Royal Parade
> Parkville, 3050
> Melbourne, Australia
> 
> 
> 
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