June 2009 Archives by author

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Starting: Mon Jun 1 15:30:52 CEST 2009
Ending: Tue Jun 30 23:49:15 CEST 2009
Messages: 487

• [BioC] questions about heatmap.2   michael watson (IAH-C)
• [BioC] Change M-value calculation from red/green to green/red   michael watson (IAH-C)
• [BioC] miRNA and validated/predicted target genes   michael watson (IAH-C)
• [BioC] miRNA validated/predicted label   michael watson (IAH-C)
• [BioC] miRNA and validated/predicted target genes   michael watson (IAH-C)
• [BioC] question about CORNA   michael watson (IAH-C)
• [BioC] how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)   michael watson (IAH-C)
• [BioC] R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)   michael watson (IAH-C)
• [BioC] R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)   michael watson (IAH-C)
• [BioC] R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)   michael watson (IAH-C)
• [BioC] R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)   michael watson (IAH-C)
• [BioC] R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)   michael watson (IAH-C)
• [BioC] R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)   michael watson (IAH-C)
• [BioC] biomaRt not working?   john seers (IFR)
• [BioC] biomaRt not working?   john seers (IFR)
• [BioC] biomaRt not working?   john seers (IFR)
• [BioC] biomaRt not working?   john seers (IFR)
• [BioC] biomaRt not working?   john seers (IFR)
• [BioC] biomaRt not working?   john seers (IFR)
• [BioC] FW: biomaRt not working?   john seers (IFR)
• [BioC] FW: biomaRt not working?   john seers (IFR)
• [BioC] XML and biomaRt problem?   john seers (IFR)
• [BioC] Bluefuse data   john seers (IFR)
• [BioC] XML and RCurl and biomaRt problem?   john seers (IFR)
• [BioC] XML and RCurl and biomaRt problem?   john seers (IFR)
• [BioC] PreProcess and Limma 'done'. What directions now?   john seers (IFR)
• [BioC] PreProcess and Limma 'done'. What directions now?   john seers (IFR)
• [BioC] Read a first ligne   john seers (IFR)
• [BioC] Variance   john seers (IFR)
• [BioC] Variance   john seers (IFR)
• [BioC] Limma - GenePix   john seers (IFR)
• [BioC] Limma - GenePix   john seers (IFR)
• [BioC] Retrieve aminoacid sequence starting from protein identifier   john seers (IFR)
• [BioC] Limma - GenePix   john seers (IFR)
• [BioC] Limma - GenePix   john seers (IFR)
• [BioC] Limma - GenePix   john seers (IFR)
• [BioC] interoperability between IRanges/ShortRead and rtracklayer   Patrick Aboyoun
• [BioC] RCurl updated to 0.98-0 in BioC 2.4 (release) and BioC 2.5 (devel) {Except Mac OS X 10.4 Tiger}   Patrick Aboyoun
• [BioC] XML and RCurl and biomaRt problem?   Patrick Aboyoun
• [BioC] hi   Patrick Aboyoun
• [BioC] RefSeq summary from biomaRt   Gad Abraham
• [BioC] RefSeq summary from biomaRt   Gad Abraham
• [BioC] XStringViews with strand?   Cei Abreu-Goodger
• [BioC] XStringViews with strand?   Cei Abreu-Goodger
• [BioC] Affy Gene ST arrays with "oligo"   Cei Abreu-Goodger
• [BioC] Random effects and variance components   Naomi Altman
• [BioC] intraspotcorrelation() in individual channel analysis   Naomi Altman
• [BioC] PCA scree plot question   Naomi Altman
• [BioC] PCA scree plot question   Naomi Altman
• [BioC] Fwd: Re: which package can do GSEA for no model organism   Naomi Altman
• [BioC] normalize.quantiles function not recognized by R   Radhika Ambatipudi
• [BioC] rtracklayer: Problems running vignette   Simon Anders
• [BioC] interoperability between IRanges/ShortRead and rtracklayer   Simon Anders
• [BioC] Bug in GenomeGraphs: makeGeneRegion fails on regions devoid of genes   Simon Anders
• [BioC] biomaRt does not like flies   Simon Anders
• [BioC] flowViz xyplot   Bastian Angermann
• [BioC] Limma - GenePix   Juana Arco
• [BioC] GenePix - Limma   Juana Arco
• [BioC] Information Regarding Your Internet Banking Account   St. George Bank
• [BioC] Important Security Notice   Cahoot Online Banking
• [BioC] You have 1 unread message   HSBC Online Banking
• [BioC] How to control allelic levels in LD computing   Basu, Analabha
• [BioC] How do you analize very large affymetrix data?   Henrik Bengtsson
• [BioC] Error in assign while calling the vmatchPattern function   Henrik Bengtsson
• [BioC] Error: All CEL files must be of the same type when running CRLMM   Henrik Bengtsson
• [BioC] PCA scree plot question   Ingunn Berget
• [BioC] justRMA() using different versions of affy   Ben Bolstad
• [BioC] read cel file of moe430a   Ben Bolstad
• [BioC] affylmGUI error   Glyn Bradley
• [BioC] Best way to do quality control and analysis on Exon arrays   Daniel Brewer
• [BioC] Oligo error on OS X Leopard   Daniel Brewer
• [BioC] Oligo error on OS X Leopard   Daniel Brewer
• [BioC] Journal Reference Management for the Busy Scientists   Anderson Brown
• [BioC] ANNOUNCEMENT: 20% discount on the most recent bioconductor/R books from Chapman & Hall/CRC!   Calver, Rob
• [BioC] extracting SNPs in a given region   Vincent Carey
• [BioC] extracting SNPs in a given region   Vincent Carey
• [BioC] PreProcess and Limma 'done'. What directions now?   Vincent Carey
• [BioC] help with estrogen dataset in factdesign package   Vincent Carey
• [BioC] help ! microarray 3d smoothed surface plot   Vincent Carey
• [BioC] Oligo error on OS X Leopard   Vincent Carey
• [BioC] Installing rMAT   Vincent Carey
• [BioC] Error: All CEL files must be of the same type when running CRLMM   Vincent Carey
• [BioC] GO terms for E. coli micro arrays (ecoliK12.db generation)   Marc Carlson
• [BioC] problem with org.Hs.egCHRLOCEND   Marc Carlson
• [BioC] GO.db: how to get GO Term   Marc Carlson
• [BioC] Annotation.db: how automatically call a mapping?   Marc Carlson
• [BioC] Fwd: Re: which package can do GSEA for no model organism   Marc Carlson
• [BioC] Info about GO package   Marc Carlson
• [BioC] Error using crlmm   Carvalho, Benilton
• [BioC] Error: All CEL files must be of the same type when running CRLMM   Carvalho, Benilton
• [BioC] Fisher-Yates algorithm for DNA shuffling ?   Robert Castelo
• [BioC] Fisher-Yates algorithm for DNA shuffling ?   Robert Castelo
• [BioC] Fisher-Yates algorithm for DNA shuffling ?   Robert Castelo
• [BioC] Info about GO package   Barbara Cegielska
• [BioC] [Fwd: Info about GO package]   Barbara Cegielska
• [BioC] GSEABase on none affy data/mapping problem(?)   Lina Cekaite
• [BioC] GSEABase on none affy data/mapping problem(?)   Lina Cekaite
• [BioC] Comparing normalization methods   Chintanu
• [BioC] Fwd: Re: which package can do GSEA for no model organism   Ana Conesa
• [BioC] Beta score of DNA methylation assays   Sean Davis
• [BioC] extracting phenotypic data from GEO (i.e. GSE8671)   Sean Davis
• [BioC] questions regarding ACME   Sean Davis
• [BioC] Illumina vs Affy chips   Sean Davis
• [BioC] Illumina vs Affy chips   Sean Davis
• [BioC] Mean column by gene   Sean Davis
• [BioC] miRNA and validated/predicted target genes   Sean Davis
• [BioC] Problem in installing "AnnotationDbi"   Sean Davis
• [BioC] Fisher-Yates algorithm for DNA shuffling ?   Sean Davis
• [BioC] how to find the validated pair (miRNA, gene-3'UTR-sequence)   Sean Davis
• [BioC] Single channel data analysis with LIMMA   Sean Davis
• [BioC] using DAVID   Sean Davis
• [BioC] RefSeq summary from biomaRt   Sean Davis
• [BioC] R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)   Sean Davis
• [BioC] how to get the miRNA, identifier from database Ensembl through biomaRt functions ???   Sean Davis
• [BioC] Comparing normalization methods   Sean Davis
• [BioC] R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)   Sean Davis
• [BioC] R: R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)   Sean Davis
• [BioC] normalization and Filtering tools   Sean Davis
• [BioC] normalization and Filtering tools   Sean Davis
• [BioC] [Fwd: Info about GO package]   Sean Davis
• [BioC] Found seven 3'UTR sequences attributed to the same ensembl_gene_id   Sean Davis
• [BioC] question about ontoCompare() performance change   Jean-Pierre Desvignes
• [BioC] plotProfiles (goProfiles) and bitmap   Jean-Pierre Desvignes
• [BioC] Single channel data analysis with LIMMA   Marcel Dinger
• [BioC] Single channel data analysis with LIMMA   Marcel Dinger
• [BioC] How to install Rgraphviz on Windows - REALLY!   Jenny Drnevich
• [BioC] How to install Rgraphviz on Windows - REALLY!   Jenny Drnevich
• [BioC] Installing rMAT   Rodrigo Drummond
• [BioC] extracting character string   Hari Easwaran
• [BioC] extracting character string   Hari Easwaran
• [BioC] Maanova   Loren Engrav
• [BioC] How do you analize very large affymetrix data?   UsuarioR España
• [BioC] Den Tists Directory in the United States   Mauricio S Estrada
• [BioC] Increase memory for R   John Fernandes
• [BioC] How to permute the CEL files   Javier Perez Florido
• [BioC] How to permute the CEL files   Javier Pérez Florido
• [BioC] Affy Exon arrays   Lasse Folkersen
• [BioC] genes in region of miRNA genes   Iain Gallagher
• [BioC] PCA scree plot question   Iain Gallagher
• [BioC] Microarray normalization in the face of many differentially expressed genes   David Garfield
• [BioC] Annotation Tools package   Giusy Della Gatta
• [BioC] Error when calling LIMMA's topTable() with an object returned by treat()   Laurent Gautier
• [BioC] Error when calling LIMMA's topTable() with an object returned by treat()   Laurent Gautier
• [BioC] Fixes to limma treat() function   Laurent Gautier
• [BioC] GSEABase on none affy data/mapping problem(?)   Laurent Gautier
• [BioC] PCA scree plot question   Paul Geeleher
• [BioC] PCA scree plot question   Paul Geeleher
• [BioC] PCA scree plot question   Paul Geeleher
• [BioC] help with estrogen dataset in factdesign package   Robert Gentleman
• [BioC] chi squared test   Robert Gentleman
• [BioC] Does factDesign deal with two-color data?   Robert Gentleman
• [BioC] Rgraphviz - arrowhead   Robert Gentleman
• [BioC] Rgraphviz - arrowhead   Robert Gentleman
• [BioC] Info about GO package   Robert Gentleman
• [BioC] help ! microarray 3d smoothed surface plot   Giulio Di Giovanni
• [BioC] Retrieve aminoacid sequence starting from protein identifier   Giulio Di Giovanni
• [BioC] help with filtering   Alberto Goldoni
• [BioC] Problem with two expression sets   Alberto Goldoni
• [BioC] help with factDesign package   Alberto Goldoni
• [BioC] help with estrogen dataset in factdesign package   Alberto Goldoni
• [BioC] help with estrogen dataset in factdesign package   Alberto Goldoni
• [BioC] Does factDesign deal with two-color data?   Alberto Goldoni
• [BioC] problem about saveHTML   Alberto Goldoni
• [BioC] problem with annaffy package   Alberto Goldoni
• [BioC] problem with the structure of a list of pathways   Alberto Goldoni
• [BioC] merging (Combining) microarray datasets on different platforms   Alberto Goldoni
• [BioC] FlowViz graphics problems   Nishant Gopalakrishnan
• [BioC] FlowCore covariance matrix for ellipsoidGate   Aric Gregson
• [BioC] flowViz xyplot smooth=F gate outline ONLY   Aric Gregson
• [BioC] question about GOSemSim   Rajarshi Guha
• [BioC] Error message of read.AgilentFE() using package Agi4x44PreProcess   xiangxue Guo
• [BioC] error massage = subscript out of bounds   Florian Hahne
• [BioC] Illumina vs Affy chips   Thomas Hampton
• [BioC] Illumina vs Affy chips   Thomas Hampton
• [BioC] Nimblegen oligo example; list.xysfiles()   Thomas Hampton
• [BioC] Venn Diagram   Thomas Hampton
• [BioC] Increase memory for R   Kasper Daniel Hansen
• [BioC] Rgraphviz crashes R (Vista x64)   Kasper Daniel Hansen
• [BioC] Rgraphviz crashes R   Kasper Daniel Hansen
• [BioC] Rgraphviz crashes R   Kasper Daniel Hansen
• [BioC] How to install Rgraphviz on Windows - REALLY!   Kasper Daniel Hansen
• [BioC] Unable to install Rgraphviz   Kasper Daniel Hansen
• [BioC] Problem with hgu133plus2.db package   Morten Hansen
• [BioC] Problem with hgu133plus2.db package   Morten Hansen
• [BioC] Error message of read.AgilentFE() using package Agi4x44PreProcess   Prashantha Hebbar
• [BioC] How to install Rgraphviz on Windows - REALLY!   Ernest Hobson
• [BioC] Rgraphviz load problem   Ernest Hobson
• [BioC] How to install Rgraphviz on Windows - REALLY!   Ernest Hobson
• [BioC] Plotting data from a bedGraph file   Michael Hoffman
• [BioC] Plotting data from a bedGraph file   Michael Hoffman
• [BioC] pathway score for individual arrays   Hooiveld, Guido
• [BioC] Error when calling LIMMA's topTable() with an object returned by treat()   Hooiveld, Guido
• [BioC] multtest: how to adjust multiple contrasts in a single run?   Hooiveld, Guido
• [BioC] Annotation.db: how automatically call a mapping?   Hooiveld, Guido
• [BioC] Annotation.db: how automatically call a mapping?   Hooiveld, Guido
• [BioC] Annotation.db: how automatically call a mapping?   Hooiveld, Guido
• [BioC] Annotation.db: how automatically call a mapping?   Hooiveld, Guido
• [BioC] Annotation.db: how automatically call a mapping?   Hooiveld, Guido
• [BioC] Annotation.db: how automatically call a mapping?   Hooiveld, Guido
• [BioC] EMBL PhD Programme   Wolfgang Huber
• [BioC] Plotting data from a bedGraph file   Wolfgang Huber
• [BioC] error massage = subscript out of bounds   Wolfgang Huber
• [BioC] More iterations for median polish using Expresso   Wolfgang Huber
• [BioC] siggenes: sam2html + affymetrix zebrafish   Sam Hunter
• [BioC] siggenes: sam2html + affymetrix zebrafish   Sam Hunter
• [BioC] Random effects and variance components (was: Yet another nested design in limma)   Paolo Innocenti
• [BioC] Problem with Hopach: "Error in dmat[ord, ]"   Paolo Innocenti
• [BioC] RMA (model II) regression with lmFit   Paolo Innocenti
• [BioC] extracting SNPs in a given region   Kay Jaja
• [BioC] How to find SNP names   Kay Jaja
• [BioC] problem with org.Hs.egCHRLOCEND   Kay Jaja
• [BioC] cosmo: how to search for more than one possible TFBS   Thierry Janssens
• [BioC] R/maanova warnings(): coercing argument of type 'double' to logical   Thierry Janssens
• [BioC] sigpathway pheno object   Adrian Johnson
• [BioC] limma and ebayes : error message : differences in versions?   Sue Jones
• [BioC] (control vs treatment) in (wildtype vs mutant) microarray analysis   Cheng-Yuan Kao
• [BioC] Bluefuse data   Narendra Kaushik
• [BioC] hi   Arpith Kishore
• [BioC] miRNA data analysis for agilent single color data   Arpith Kishore
• [BioC] Methods in decideTests (limma)   Michal Kolář
• [BioC] Methods in decideTests (limma)   Michal Kolář
• [BioC] Methods in decideTests (limma)   Michal Kolář
• [BioC] Annotation Tools package   Alexandre Kuhn
• [BioC] Installing an older release of Bioconductor   Veni Kurup
• [BioC] Installing an older release of Bioconductor   Veni Kurup
• [BioC] miRNA and validated/predicted target genes   Wacek Kusnierczyk
• [BioC] GO.db: how to get GO Term   Wacek Kusnierczyk
• [BioC] GO.db: how to get GO Term   Wacek Kusnierczyk
• [BioC] Harvard Personalized Medicine Research Fellowship   CBMI LPMGEN1
• [BioC] Read a first ligne   Mohamed Lajnef
• [BioC] normalization and Filtering tools   Mohamed Lajnef
• [BioC] rtracklayer: Problems running vignette   Michael Lawrence
• [BioC] interoperability between IRanges/ShortRead and rtracklayer   Michael Lawrence
• [BioC] rtracklayer: Problems running vignette   Michael Lawrence
• [BioC] rtracklayer: Problems running vignette   Michael Lawrence
• [BioC] rtracklayer: Problems running vignette   Michael Lawrence
• [BioC] Plotting data from a bedGraph file   Michael Lawrence
• [BioC] IRanges problem: ranges (overlap (range.1, range.2)) does not seem to work   Michael Lawrence
• [BioC] rtracklayer no longer uses TrackSet?   Michael Lawrence
• [BioC] rtracklayer no longer uses TrackSet?   Michael Lawrence
• [BioC] biomaRt not working?   Paul Leo
• [BioC] Fitting DNA histograms - a package   Paul Leo
• [BioC] GO terms for E. coli micro arrays (ecoliK12.db generation)   Gaspard Lequeux
• [BioC] GO terms for E. coli micro arrays (ecoliK12.db generation)   Gaspard Lequeux
• [BioC] help on analysis ChiP-chip data of affyymetrix Arabidopsis tilling array   Daofeng Li
• [BioC] help on analysis ChiP-chip data of affyymetrix Arabidopsistilling array   Daofeng Li
• [BioC] help on analysis ChiP-chip data of affyymetrix Arabidopsistilling array   Daofeng Li
• [BioC] help on analysis ChiP-chip data of affyymetrix Arabidopsistilling array   Daofeng Li
• [BioC] chi squared test   Hai-Ri Li
• [BioC] read cel file of moe430a   Ming-Chung Li
• [BioC] merging (Combining) microarray datasets on different platforms   LiGang
• [BioC] GO package   Steve Lianoglou
• [BioC] PreProcess and Limma 'done'. What directions now?   Steve Lianoglou
• [BioC] Installing an older release of Bioconductor   Steve Lianoglou
• [BioC] R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)   Steve Lianoglou
• [BioC] R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)   Steve Lianoglou
• [BioC] Error message, when updating packages   Steve Lianoglou
• [BioC] RefSeq summary from biomaRt   Steve Lianoglou
• [BioC] R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)   Steve Lianoglou
• [BioC] help on analysis ChiP-chip data of affyymetrix Arabidopsistilling array   Steve Lianoglou
• [BioC] R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)   Steve Lianoglou
• [BioC] Missing Autocorrelation in Ringo   Steve Lianoglou
• [BioC] normalize.quantiles function not recognized by R   Steve Lianoglou
• [BioC] Error message of read.AgilentFE() using package Agi4x44PreProcess   Pedro Lopez-Romero
• [BioC] problem with the structure of a list of pathways   James MacDonald
• [BioC] [Bioc-devel] help with limma design   James MacDonald
• [BioC] question about GOSemSim   James MacDonald
• [BioC] MAS5 to selected average   James W. MacDonald
• [BioC] Random effects and variance components   James W. MacDonald
• [BioC] More iterations for median polish using Expresso   James W. MacDonald
• [BioC] biomaRt not working?   James W. MacDonald
• [BioC] rtracklayer: Problems running vignette   James W. MacDonald
• [BioC] dbSNP build for R package SNPlocs.Hsapiens.dbSNP.20080617   James W. MacDonald
• [BioC] rtracklayer: Problems running vignette   James W. MacDonald
• [BioC] limma and ebayes : error message : differences in versions?   James W. MacDonald
• [BioC] chi squared test   James W. MacDonald
• [BioC] problem with org.Hs.egCHRLOCEND   James W. MacDonald
• [BioC] problem with org.Hs.egCHRLOCEND   James W. MacDonald
• [BioC] [Bioc-devel] help with limma design   James W. MacDonald
• [BioC] Annotation.db: how automatically call a mapping?   James W. MacDonald
• [BioC] Annotation.db: how automatically call a mapping?   James W. MacDonald
• [BioC] SD of fitted values, lmFit (limma)   Heather Machado
• [BioC] Mille km d'assurance auto offerts avec Amaguiz   Amaguiz par MailandGo
• [BioC] Toute l'offre Meetic gratuitement   Meetic par MailandGo
• [BioC] Jusqu'à 58 pourcent d'economie sur vos frais bancaires   Monabanq par MailandGo
• [BioC] Profitez de 30 euros offerts pour en gagner plus   PMU par MailandGo
• [BioC] profitez du pret à taux promo simulation et réponse en ligne   Sofinco par MailandGo
• [BioC] Le placement anti-crise est arrive 4,95% pendant 8 ans   GAN patrimoine par MailandGo
• [BioC] -50% sur vos magazines pendant 8 mois   Plusdemags.com via MailandGo
• [BioC] question about ontoCompare() performance change   Scott Markel
• [BioC] Rgraphviz crashes R (Vista x64)   Sofia Massa
• [BioC] Rgraphviz crashes R   Sofia Massa
• [BioC] avereps function   Erika Melissari
• [BioC] help needed on avereps function   Erika Melissari
• [BioC] available gene sets for mouse 430.2   Julien Meunier
• [BioC] R user survey   Muriel Mewissen
• [BioC] Annotation.db: how automatically call a mapping?   P.D. Moerland
• [BioC] variable as argument to makeContrasts (limma)   Saroj K Mohapatra
• [BioC] variable as argument to makeContrasts (limma)   Saroj K Mohapatra
• [BioC] pathway score for individual arrays   Saroj K Mohapatra
• [BioC] identification of disease groups   Saroj K Mohapatra
• [BioC] Simpleaffy QC   Saroj K Mohapatra
• [BioC] Simpleaffy QC & GAPDH ratios   Saroj K Mohapatra
• [BioC] Error when calling LIMMA's topTable() with an object returned by treat()   Saroj K Mohapatra
• [BioC] Affymetrix design   Saroj K Mohapatra
• [BioC] Affymetrix design   Saroj K Mohapatra
• [BioC] Check out the eCard I sent you from Yahoo! Greetings   Jane Moore
• [BioC] Installation of a custom cdf hs133phsentrezgcdf   Martin Morgan
• [BioC] More iterations for median polish using Expresso   Martin Morgan
• [BioC] variable as argument to makeContrasts (limma)   Martin Morgan
• [BioC] variable as argument to makeContrasts (limma)   Martin Morgan
• [BioC] extracting phenotypic data from GEO (i.e. GSE8671)   Martin Morgan
• [BioC] missing content in limma documentation pdf   Martin Morgan
• [BioC] missing content in limma documentation pdf   Martin Morgan
• [BioC] Problem with hgu133plus2.db package   Martin Morgan
• [BioC] Problem with hgu133plus2.db package   Martin Morgan
• [BioC] How to permute the CEL files   Martin Morgan
• [BioC] GSEABase on none affy data/mapping problem(?)   Martin Morgan
• [BioC] GSEABase on none affy data/mapping problem(?)   Martin Morgan
• [BioC] GO.db: how to get GO Term   Martin Morgan
• [BioC] GO.db: how to get GO Term   Martin Morgan
• [BioC] Annotation.db: how automatically call a mapping?   Martin Morgan
• [BioC] Annotation.db: how automatically call a mapping?   Martin Morgan
• [BioC] R and Microarray Analysis in R courses from Imperial College   North, Bernard V
• [BioC] using DAVID   Simon Noël
• [BioC] Venn Diagram   Simon Noël
• [BioC] Message from Australian Government   Australian Taxation Office
• [BioC] miRNA and validated/predicted target genes   Michal Okoniewski
• [BioC] variable as argument to makeContrasts (limma)   Georg Otto
• [BioC] variable as argument to makeContrasts (limma)   Georg Otto
• [BioC] variable as argument to makeContrasts (limma)   Georg Otto
• [BioC] limma design question - technical replicates   Georg Otto
• [BioC] Fisher-Yates algorithm for DNA shuffling ?   Ludo Pagie
• [BioC] Error in masks for Dmelanogaster BSGenome   Hervé Pagès
• [BioC] Error in masks for Dmelanogaster BSGenome   Hervé Pagès
• [BioC] dbSNP build for R package SNPlocs.Hsapiens.dbSNP.20080617   Hervé Pagès
• [BioC] dbSNP build for R package SNPlocs.Hsapiens.dbSNP.20080617   Hervé Pagès
• [BioC] XStringViews with strand?   Hervé Pagès
• [BioC] New SNPlocs data package for Human (dbSNP BUILD 130)   Hervé Pagès
• [BioC] How to find SNP names   Hervé Pagès
• [BioC] extracting character string   Hervé Pagès
• [BioC] Error in assign while calling the vmatchPattern function   Hervé Pagès
• [BioC] Fisher-Yates algorithm for DNA shuffling ?   Hervé Pagès
• [BioC] GO.db: how to get GO Term   Hervé Pagès
• [BioC] help with factDesign package   Richard Pearson
• [BioC] biomaRt not working?   Steve Pederson
• [BioC] help needed on avereps function   Francois Pepin
• [BioC] PreProcess and Limma 'done'. What directions now?   Massimo Pinto
• [BioC] PreProcess and Limma 'done'. What directions now?   Massimo Pinto
• [BioC] PreProcess and Limma 'done'. What directions now?   Massimo Pinto
• [BioC] PreProcess and Limma 'done'. What directions now?   Massimo Pinto
• [BioC] PreProcess and Limma 'done'. What directions now?   Massimo Pinto
• [BioC] Beta score of DNA methylation assays   Adaikalavan Ramasamy
• [BioC] error massage = subscript out of bounds   Hecker Regina
• [BioC] problem with org.Hs.egCHRLOCEND   James F. Reid
• [BioC] GenomeGraphs/biomaRt/getBM on older genome builds   Mark Robinson
• [BioC] Fwd: Presentation 19th June   Mark Robinson
• [BioC] Fwd: Presentation 19th June   Mark Robinson
• [BioC] extracting character string   Mark Robinson
• [BioC] Error in masks for Dmelanogaster BSGenome   David Rossell
• [BioC] Output problem in biomaRt 2.0.0   David Rossell
• [BioC] Output problem in biomaRt 2.0.0   David Rossell
• [BioC] Rgraphviz - arrowhead   Deepayan Sarkar
• [BioC] Rgraphviz - arrowhead   Deepayan Sarkar
• [BioC] flowViz xyplot   Deepayan Sarkar
• [BioC] flowViz xyplot smooth=F gate outline ONLY   Deepayan Sarkar
• [BioC] Affymetrix design   Sarmah, Chintanu
• [BioC] Affymetrix design   Sarmah, Chintanu
• [BioC] Simpleaffy QC   Lana Schaffer
• [BioC] Simpleaffy QC & GAPDH ratios   Lana Schaffer
• [BioC] FlowViz graphics problems   Anja Schiel
• [BioC] FlowViz graphics problems   Anja Schiel
• [BioC] Does factDesign deal with two-color data?   Denise Scholtens
• [BioC] Rgraphviz - arrowhead   Yaniv Semel
• [BioC] Rgraphviz - arrowhead   Yaniv Semel
• [BioC] Rgraphviz - arrowhead   Yaniv Semel
• [BioC] Rgraphviz - arrowhead   Yaniv Semel
• [BioC] Rgraphviz - arrowhead   Yaniv Semel
• [BioC] Beta score of DNA methylation assays   Sonia Shah
• [BioC] IRanges problem: ranges (overlap (range.1, range.2)) does not seem to work   Paul Shannon
• [BioC] IRanges problem: ranges (overlap (range.1, range.2)) does not seem to work   Paul Shannon
• [BioC] build a chromLocation object for SNP locations, not genes   Paul Shannon
• [BioC] rtracklayer no longer uses TrackSet?   Paul Shannon
• [BioC] variable as argument to makeContrasts (limma)   Gordon K Smyth
• [BioC] Methods in decideTests (limma)   Gordon K Smyth
• [BioC] Methods in decideTests (limma)   Gordon K Smyth
• [BioC] Methods in decideTests (limma)   Gordon K Smyth
• [BioC] intraspotcorrelation() in individual channel analysis   Gordon K Smyth
• [BioC] Change M-value calculation from red/green to green/red   Gordon K Smyth
• [BioC] Error when calling LIMMA's topTable() with an object returned by treat()   Gordon K Smyth
• [BioC] Fixes to limma treat() function   Gordon K Smyth
• [BioC] GO.db: how to get GO Term   Gordon K Smyth
• [BioC] Limma - GenePix   Gordon K Smyth
• [BioC] Limma - GenePix   Gordon K Smyth
• [BioC] Limma - GenePix   Gordon K Smyth
• [BioC] Normalized data in expresso and Expression Console differ   Oliver Stolpe
• [BioC] Oligo error on OS X Leopard   Tobias Straub
• [BioC] Agi4x44PreProcess probe summarization bug?   Tobias Straub
• [BioC] Navigating data in the cellHTS2 object   Ian Sudbery
• [BioC] cellHTS readPlateList funciton cannot find files   Ian Sudbery
• [BioC] cellHTS readPlateList funciton cannot find files   Ian Sudbery
• [BioC] Fwd: Re: which package can do GSEA for no model organism   Ian Sudbery
• [BioC] dbSNP build for R package SNPlocs.Hsapiens.dbSNP.20080617   Lin Tang
• [BioC] dbSNP build for R package SNPlocs.Hsapiens.dbSNP.20080617   Lin Tang
• [BioC] Affy Exon arrays   Tarca, Adi
• [BioC] Machine Learning Applications in Bioinformatics and Computational Biology (ICMLA 2009)   Tarca, Adi
• [BioC] Problem with two expression sets   Joern Toedling
• [BioC] Missing Autocorrelation in Ringo   Joern Toedling
• [BioC] Missing Autocorrelation in Ringo   Joern Toedling
• [BioC] identification of disease groups   Abhilash Venu
• [BioC] identification of disease groups   Abhilash Venu
• [BioC] Change M-value calculation from red/green to green/red   Torsten Waldminghaus
• [BioC] Change M-value calculation from red/green to green/red   Torsten Waldminghaus
• [BioC] missing content in limma documentation pdf   Torsten Waldminghaus
• [BioC] help on analysis ChiP-chip data of affyymetrix Arabidopsistilling array   Torsten Waldminghaus
• [BioC] Missing Autocorrelation in Ringo   Torsten Waldminghaus
• [BioC] Missing Autocorrelation in Ringo   Torsten Waldminghaus
• [BioC] bioinformatics programmer position   Wall, Dennis Paul
• [BioC] Error message, when updating packages   Michael Walter
• [BioC] questions about heatmap.2   Wei Xu
• [BioC] questions about heatmap.2   Wei Xu
• [BioC] which package can do GSEA for no model organism   Pengcheng Yang
• [BioC] Fwd: Re: which package can do GSEA for no model organism   Pengcheng Yang
• [BioC] extracting phenotypic data from GEO (i.e. GSE8671)   Andrew Yee
• [BioC] extracting phenotypic data from GEO (i.e. GSE8671)   Andrew Yee
• [BioC] merging (Combining) microarray datasets on different platforms   Hui Yu
• [BioC] Important KEGGgraph update (parse issue solved)   Jitao David Zhang
• [BioC] Annotation.db: how automatically call a mapping?   John Zhang
• [BioC] Does factDesign deal with two-color data?   Dejian Zhao
• [BioC] Does factDesign deal with two-color data?   Dejian Zhao
• [BioC] dye effect in limma   Dejian Zhao
• [BioC] GO package   Joanna Zyprych
• [BioC] miRNA and validated/predicted target genes   mauede at alice.it
• [BioC] miRNA validated/predicted label   mauede at alice.it
• [BioC] R: miRNA and validated/predicted target genes   mauede at alice.it
• [BioC] question about CORNA   mauede at alice.it
• [BioC] how to find the validated pair (miRNA, gene-3'UTR-sequence)   mauede at alice.it
• [BioC] how to find the validated pair (miRNA, gene-3'UTR-sequence)   mauede at alice.it
• [BioC] how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)   mauede at alice.it
• [BioC] R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)   mauede at alice.it
• [BioC] R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)   mauede at alice.it
• [BioC] R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)   mauede at alice.it
• [BioC] how to get the miRNA, identifier from database Ensembl through biomaRt functions ???   mauede at alice.it
• [BioC] R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)   mauede at alice.it
• [BioC] R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)   mauede at alice.it
• [BioC] R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)   mauede at alice.it
• [BioC] R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)   mauede at alice.it
• [BioC] R: R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)   mauede at alice.it
• [BioC] R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)   mauede at alice.it
• [BioC] one more doubt about the (miRNA, gene-3UTR) pairs from Ensembl and BioMart   mauede at alice.it
• [BioC] Found seven 3'UTR sequences attributed to the same ensembl_gene_id   mauede at alice.it
• [BioC] 10 annuaires pour votre prospection commercial pour bioconductor   annuaire-perpetuel.pro
• [BioC] Error using crlmm   mcoyne at boninc.com
• [BioC] Error: All CEL files must be of the same type when running CRLMM   mcoyne at boninc.com
• [BioC] Does CRLMM uses mismatched features?   mcoyne at boninc.com
• [BioC] Affy Exon arrays   cstrato
• [BioC] Illumina vs Affy chips   cstrato
• [BioC] Illumina vs Affy chips   cstrato
• [BioC] Affy Gene ST arrays with "oligo"   cstrato
• [BioC] How do you analize very large affymetrix data?   cstrato
• [BioC] Normalized data in expresso and Expression Console differ   cstrato
• [BioC] Oligo error on OS X Leopard   cstrato
• [BioC] justRMA() using different versions of affy   cstrato
• [BioC] using DAVID   carolmtz at ibt.unam.mx
• [BioC] GO.db: how to get GO Term   Waclaw.Marcin.Kusnierczyk at idi.ntnu.no
• [BioC] Les associations pour developper vos affaires pour bioconductor   jo-association.pro
• [BioC] Message could not be delivered   Confirmation from khenning at bigpond.net.au
• [BioC] Detection with Lumi package VS Detection pvalue in illumina   Mohamed lajnef
• [BioC] Mean column by gene   Mohamed lajnef
• [BioC] SNPs in High Linkage Disequilibrium   palermogp at libero.it
• [BioC] Variance   David martin
• [BioC] Variance   David martin
• [BioC] Variance   David martin
• [BioC] Variance   David martin
• [BioC] More iterations for median polish using Expresso   jchayes at mcb.umass.edu
• [BioC] Problem in installing "AnnotationDbi"   vivek modi
• [BioC] Degrees of freedom in randomized block test   mswierniak
• [BioC] Limma for time series analysis   claire pujoll
• [BioC] Increase memory for R   santana sarma
• [BioC] Unable to install Rgraphviz   anupam sinha
• [BioC] Unable to install Rgraphviz   anupam sinha
• [BioC] error message about makeTranscript funciton in package GenomeGraphs   Steffen at stat.Berkeley.EDU
• [BioC] GenomeGraphs/biomaRt/getBM on older genome builds   Steffen at stat.Berkeley.EDU
• [BioC] GO package   anna freni sterrantino
• [BioC] Regions InterAct Confirmation Form.   www.moneybookers.com
• [BioC] using DAVID   yemi yomi
• [BioC] error message about makeTranscript funciton in package GenomeGraphs   shirley zhang

Last message date: Tue Jun 30 23:49:15 CEST 2009
Archived on: Tue Jun 30 23:50:30 CEST 2009

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