[BioC] Does factDesign deal with two-color data?

[Denise Scholtens]

Hi Dejian,

Currently, factDesign is not directly set up to deal with two-color  
data, although the functions could be adapted easily enough.  I might  
recommend the limma package.  The user's manual contains several  
examples of two-color data analysis.

Hope that helps -
Denise


On Jun 11, 2009, at 4:40 AM, Dejian Zhao wrote:

> Hi,
> I learned about factDesign package from a scientific  article which
> deals with affy data.
> The command library(help=factDesign) invokes some information about  
> this
> package.
> It shows that this package "Suggests:      affy".
> Therefore I wonder whether the factDesign package can deal with
> two-color data.
> Thanks
>
> Dejian
>
>
> Package:       factDesign
> Title:         Factorial designed microarray experiment analysis
> Version:       1.20.0
> Author:        Denise Scholtens
> Description:   This package provides a set of tools for analyzing data
> from a factorial designed microarray experiment,
>                or any microarray experiment for which a linear  
> model is
> appropriate. The functions can be used to
>                evaluate tests of contrast of biological interest and
> perform single outlier detection.
> Imports:       genefilter, stats
> _*Suggests:      affy*_
>
> 	[[alternative HTML version deleted]]
>
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